Job Description P26458 Confidence 5.61% Date Thu Jan 5 11:42:54 GMT 2012 Rank 16 Aligned Residues 135 % Identity 13% Template c3hfxA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:l-carnitine/gamma-butyrobetaine antiporter; PDBTitle: crystal structure of carnitine transporter Resolution 3.15 Å

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		32	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.																												70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	G	C	L	L	P	L	V	A	R	N	D	D	E	R	R	I	V	I	N	S	V	G	A	H	W	E	G	N	Q	V	W	L	I	L	A	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	L	F	A	A	W	P	R	V	Y	A	A	A	F	S
Query Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.
Template Conservation																																																																										.	.
Template Sequence		M	S	I	F	L	A	R	I	S	R	G	R	T	V	R	E	L	C	F	G	M	V	L	G	L	T	A	S	T	W	I	L	W	T	V	L	G	S	N	T	L	L	L	I	D	K	N	I	I	N	I	P	N	L	I	E	Q	Y	G	V	A	R	A	I	I	E	T	W	A	A	L	P	.	.	L	S	T	A	T	M
Template Known Secondary structure									T		S	S																																			T	T	S								G	G	G												T	S	S	.	.	S	T	T
Template Predicted Secondary structure																																																																										.	.
Template SS confidence
		331	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.			.	.	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.									.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.
Query Sequence		G	F	Y	V	A	M	I	L	V	L	C	S	L	F	F	R	P	L	A	F	D	Y	.	.	.	.	.	.	.	.	R	G	K	I	A	D	A	R	W	R	K	M	W	D	A	G	L	V	I	G	S	L	V	P	P	V	V	F	G	I	A	F	G	N	L	L	L	G	V	P	F	A	F	T	P	Q	L	R	V	E
Query Conservation																								.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.
Template Conservation																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.
Template Sequence		W	G	F	F	I	L	C	F	I	A	T	V	T	L	V	N	A	C	S	Y	T	L	A	M	S	T	C	R	E	V	R	D	G	E	E	P	P	L	L	V	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	G	W	S	I	L	V	G	I	I	G	I	V	L	L	A	L	.	.	.	.	.	.	.	.
Template Known Secondary structure																										T	T	S		S	S	S	S	S		S	S		S	T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.	.	.	.	.	.
Template SS confidence
		409	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.															450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.		.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure																				.
Query SS confidence																				.
Query Sequence		Y	L	G	S	F	W	Q	L	L	T	P	F	P	L	L	C	G	L	.	L	S	L	G	M	V	I	L	Q	G	G	V	W	L	Q	L	K	T	V
Query Conservation																				.
Alig confidence		.	.	.																.
Template Conservation		.	.	.
Template Sequence		.	.	.	G	G	L	K	P	I	Q	T	A	I	I	A	G	G	C	P	L	F	F	V	N	I	M	V	T	L	S	F	I	K	D	A	K	Q	N
Template Known Secondary structure		.	.	.		S	S																																T
Template Predicted Secondary structure		.	.	.
Template SS confidence
					467	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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