 |
Job Description | P26458 | Confidence | 4.16% | Date | Thu Jan 5 11:42:54 GMT 2012 |
Rank | 31 | Aligned Residues | 39 |
% Identity | 13% | Template | c2cfhD_ |
PDB info |
PDB header:transport | Chain: D: PDB Molecule:trafficking protein particle complex subunit 6b; |
PDBTitle: structure of the bet3-tpc6b core of trapp
|
Resolution | 2.30 Å |
|
  |   |
27 | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | F | D | M | G | I | G | C | L | L | P | L | V | A | R | N | D | D | E | R | R | I | V | I | N | S | V | G | A | H | W | E | G | N | Q | V | W | L | I | L | A | G |
Query Conservation |   |
|
|
|   |
|
|
|
|
|   |   |   |   |   |
|   |
|   |
|
|   |   |   |   |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |   |
|
|   |
|
|   |
|   |   |   |   |   |   |   |
|   |   |   |   |
| . |   |
|
|
|
|
| . | . |   |   |   |   |
|   |   |
|
|
|
Template Sequence |   |
G | F | R | V | G | Q | G | L | I | E | R | F | T | K | D | T | A | R | F | K | D | E | L | . |
D | I | M | K | F | I | . |
. |
C | K | D | F | W | T | T | V | F | K |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
| T | T | T |
| S |  |  | . |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  | S |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  | . |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | |
. | . | . | . | . | . | |
|
. | 70 | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|