Job Description P76551 Confidence 99.21% Date Thu Jan 5 12:24:28 GMT 2012 Rank 30 Aligned Residues 236 % Identity 11% Template c3js6A_ PDB info PDB header:unknown function Chain: A: PDB Molecule:uncharacterized parm protein; PDBTitle: crystal structure of apo psk41 parm protein Resolution 1.95 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.																												.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	L	S	V	G	I	D	I	G	T	T	T	T	Q	V	I	F	S	R	L	E	L	V	N	R	A	A	V	S	Q	V	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	Y	E	F	I	K	R	E	I	S	W	Q	S	P	V	F	F	T	P	V	D
Query Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	Y	V	X	A	L	D	F	G	N	G	F	V	K	G	K	I	N	D	E	K	F	V	I	P	S	R	I	G	R	K	T	N	E	N	N	Q	L	K	G	F	V	D	N	K	L	D	V	S	E	F	I	I	N	G	N	N	D	E	V	L	L	F	G	N	D	L	D	K	T	T	N	T	G	K	D	T	A	S	T
Template Known Secondary structure											S	S							T	T							S							S	S			S	S	T	T	T	S					S							T	T		T	T						S	T	T						S								S
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80		.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.														.	.	.	.	120	.	.	.	.
Predicted Secondary structure																								.																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	Q	G	G	L	K	E	A	E	L	K	T	L	I	L	E	Q	Y	H	A	A	G	.	I	E	P	E	S	V	D	S	G	A	I	I	I	T	G	E	S	A	K	T	R	N	A	R	P	A	V	M	A	L	S	Q	S	L	G	.	.	.	.	.	.	.	.	.	.	.	.	.	D	F	V	V	A	S	A	G	P
Query Conservation																								.																																				.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																								.																																				.	.	.	.	.	.	.	.	.	.	.	.	.								.	.
Template Conservation																																																																																.	.
Template Sequence		N	D	R	Y	D	I	K	S	F	K	D	L	V	E	C	S	I	G	L	L	A	R	E	V	P	E	E	V	V	N	V	V	I	A	T	G	X	P	S	N	E	I	G	T	D	K	Q	A	K	F	E	K	L	L	N	K	S	R	L	I	E	I	D	G	I	A	K	T	I	N	V	K	G	V	K	I	V	A	.	.
Template Known Secondary structure		T	T	G	G	G	S																T	T	S		S	S												G	G	G	T	T	S											S	S							T	T															.	.
Template Predicted Secondary structure																																																																																.	.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		125	.	.	.	.	130	.	.	.	.	.	.				.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.			170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.																																		.	.
Query SS confidence														.	.	.																																		.	.
Query Sequence		H	L	E	S	V	I	A	G	H	G	A	G	.	.	.	A	Q	T	L	S	E	Q	R	L	C	R	V	L	N	I	D	I	G	G	G	T	A	N	Y	A	L	F	D	A	G	K	I	S	.	.	G	T	A	C	L	N	V	G	G	R	L	L	E	T	D	S	H	G	R	V	V	Y	A	H	K	P	G	Q	M	I
Query Conservation														.	.	.																																		.	.
Alig confidence		.	.											.	.	.																																		.	.																						.	.	.	.	.	.	.	.	.
Template Conservation		.	.																																																																						.	.	.	.	.	.	.	.	.
Template Sequence		.	.	Q	P	X	G	T	L	L	D	L	N	X	E	N	G	K	V	F	K	A	F	T	E	G	K	Y	S	V	L	D	F	G	S	G	T	T	I	I	D	T	Y	Q	N	X	K	R	V	E	E	E	S	F	V	I	N	K	G	T	I	D	F	Y	K	R	I	A	S	H	V	S	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.									T	T			T	T								T										S	S									T	T				G	G	G					S														T		.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.																																																																						.	.	.	.	.	.	.	.	.
Template SS confidence
				162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	D	E	C	F	G	A	G	T	D	A	R	S	L	T	G	A	Q	L	V	Q	V	T	R	R	M	A	E	L	I	V	E	V	I	D	G	T	L	S	P	L	A	Q	A	L	M	Q	T	G	L	L	P	A	G	V	T	P	E	I	I	T	L	S	G	G	V	G	E	C	Y	R	H
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																																									.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.																																									.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	T	P	R	M	I	E	K	G	L	E	F	K	D	E	F	Y	K	E	Q	D	S	L	I	E	E	V	X	S	N	F	E	I	T	V	G	N	I	N	S	I	.	.	.	.	.	.	D	R	I	I	V	T	G	G	G	A	N	I	H	F	D
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.							S																											T			T	T	S		.	.	.	.	.	.	S						S	T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																																									.	.	.	.	.	.
Template SS confidence
													239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.							.	280	.	.	.	.	.	.	.	.	.	290	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions