 |
Job Description | P76551 | Confidence | 27.07% | Date | Thu Jan 5 12:24:28 GMT 2012 |
Rank | 145 | Aligned Residues | 71 |
% Identity | 14% | Template | c3b4uB_ |
PDB info |
PDB header:lyase | Chain: B: PDB Molecule:dihydrodipicolinate synthase; |
PDBTitle: crystal structure of dihydrodipicolinate synthase from agrobacterium2 tumefaciens str. c58
|
Resolution | 1.20 Å |
|
 |
  |   |
45 | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | |
|
|
|
|
. | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
E | I | S | W | Q | S | P | V | F | F | T | P | V | D | K | Q | G | G | L | K | E | A | E | L | K | T | L | I | L | E | Q | Y | H | A | A | G | I | E | P | E | S | V | D | S | G | A | I | I | I | T | G | E | S | A | K | T | R | . |
. |
. |
. |
. |
N | A | R | P | A | V | M | A | L | S | Q | S | L | G | D | F | V | V |
Query Conservation |   |
  |
|
|   |   |   |   |
|   |   |
|
|
|   |   |   |
|
|
|
|   |
|
|   |   |   |   |
|   |   |   |   |   |   |
|   |   |   |   |   |   |
|   |   |   |   |
|
|   |
|   |
|   |   |   |   |   | . | . | . | . | . |
|   |   |
|
|
|
|   |
|   |   |   |   |
|   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|
|   |   |
|   |   |
|
|
|   |   |
|
|   |
|
|   |   |   |   |   |   |   |
|   |   |
|
|   |   | . |
|
|   |
| . | . | . | . | . | . | . |
|   |
|   |
|
|
|
|
|   |   |   |
|
|   |   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
Q | K | F | G | L | S | A | A | L | T | T | P | F | K | T | D | G | T | V | D | I | D | A | M | I | A | H | A | R | R | C | L | S | N | . |
G | C | D | S | . |
. |
. |
. |
. |
. |
. |
V | T | L | F | G | T | T | G | E | G | C | S | V | G | S | R | E | R | Q | A | I | L | S | S | F | I | A | A | G | I | A | P | S | R |
Template Known Secondary structure |   |
|
|
|  |  |  |  |  |
|
|
|
| B |
| T | T | S | S | B |
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | . | T |
| S |  | . | . | . | . | . | . | . |  |  |  | S | S | T | T | T | T | G | G | G | S |
| T | T |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
| G | G | G |
Template Predicted Secondary structure |   |
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
| . |
|
|
|  | . | . | . | . | . | . | . |  |  |  |
|
|
|
|
|
|
|  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
3 | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | |
. | . | . | 40 | |
|
|
|
|
|
|
. | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . |
  |
  |   |
120 | . | . | . |
Predicted Secondary structure |   |
 |  |  |
|
Query SS confidence |   |
|
|
|
|
Query Sequence |   |
A | S | A | G |
Query Conservation |   |
|
|
|
|
Alig confidence |   |
|
|
|
|
Template Conservation |   |
|
|   |
|
Template Sequence |   |
I | V | T | G |
Template Known Secondary structure |   |
 |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |
Template SS confidence |   |
|
|
|
|
  |   |
75 | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|