Job Description P76551 Confidence 94.63% Date Thu Jan 5 12:24:28 GMT 2012 Rank 69 Aligned Residues 238 % Identity 16% Template c1z05A_ PDB info PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator, rok family; PDBTitle: crystal structure of the rok family transcriptional regulator, homolog2 of e.coli mlc protein. Resolution 2.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	T	R	Q	L	L	S	V	G	I	D	I	G	T	T	T	T	Q	V	I	F	S	R	L	E	L	V	N	R	A	A	V	S	Q	V	P	R	Y	E	F	I	K	R	E	I	S	W	Q	S	P	V	F	F	T	P	V	D	K	Q	G	G	L	K	E	A	E	L	K	T	L	I	L	E	Q	Y	H	A	A	G	I
Query Conservation
Alig confidence																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Template Conservation																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Template Sequence		N	N	L	G	W	Q	F	L	S	M	R	L	G	R	G	Y	L	T	I	A	L	H	E	L	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	V	L	I	D	T	K	I	D	I	H	E	I	D	Q	D	D	V	L	.	.	A	R	L	L	F	E	I	E	E	F	F	Q	T	Y	A	A
Template Known Secondary structure				T	T										T	T									T	T	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														B						.	.														T	T	T
Template Predicted Secondary structure																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.																		.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.			.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.												.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	P	E	S	V	D	S	G	A	I	I	I	T	G	E	S	A	K	T	R	.	.	.	.	.	.	.	.	.	.	.	N	A	R	P	A	V	M	A	L	S	Q	S	L	G	D	F	V	V	A	S	A	G	P	H	L	E	S	V	I	A	G	H	G	A	G	A	Q	T	L	S	E	Q	R	L	C	R	V	L	N
Query Conservation																						.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.																						.	.	.	.										.
Template Conservation																																																						.	.	.	.										.
Template Sequence		Q	L	D	R	V	T	S	I	A	I	T	L	P	G	L	V	N	S	E	Q	G	I	V	L	Q	M	P	H	Y	N	V	K	N	L	A	L	G	P	E	I	Y	K	A	T	G	L	P	V	F	V	A	N	.	.	.	.	D	T	R	A	W	A	L	A	E	.	K	L	F	G	H	S	Q	D	V	D	N	S	V	L
Template Known Secondary structure		T												S	S				T	T	T	T						S	S	S	B		S	S	B												S							.	.	.	.										.				S	T	T	T	T		S	S
Template Predicted Secondary structure																																																						.	.	.	.										.
Template SS confidence
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.					.	.	.	.	.	.	.	200	.		.	.	.	.	.	.	.	.	210	.	.	.	.	.
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.		.	180	.	.	.	.	.	.	.	.	.	190																	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.
Predicted Secondary structure																														.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																														.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	D	I	G	G	G	T	A	N	Y	A	L	F	D	A	G	K	I	S	G	T	A	C	L	N	V	G	G	.	R	L	L	E	T	D	S	H	G	R	V	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	A	H	K	P	G	Q	M	I	V	D	E	C	F	G	A	G	T	D	A	R	S	L
Query Conservation																														.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.																				.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.
Template Sequence		I	S	I	H	H	G	L	G	.	A	G	I	V	L	D	G	R	V	L	Q	G	R	H	G	N	I	G	E	L	G	H	I	Q	I	D	P	Q	G	K	R	C	H	C	G	N	Y	G	C	L	E	T	V	A	S	S	Q	A	I	R	D	Q	V	T	A	R	I	Q	A	G	E	P	S	C	L	A	T	V	E	E	I
Template Known Secondary structure					S	S	S			.						T	T					T	T	T	T		T	T	B		T	T	S	B			T	T			B		T	T	S		B	S	B	T					S														T	T				T	T	T	T		S	S
Template Predicted Secondary structure										.
Template SS confidence
		216	.	.	.	220	.	.	.		.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.
		214	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	A	Q	L	V	Q	V	T	R	R	M	A	E	L	I	V	E	V	I	D	G	T	L	S	P	L	A	Q	A	L	M	Q	T	G	L	L	P	A	G	V	T	P	E	I	I	T	L	S	G	G	V	G	E
Query Conservation
Alig confidence																																			.	.	.
Template Conservation																																			.	.	.
Template Sequence		S	I	E	D	I	C	A	A	A	A	D	G	D	P	L	A	V	D	V	I	Q	Q	L	G	R	Y	L	G	A	A	I	A	I	.	.	.	V	I	N	L	F	N	P	E	K	I	L	I	G	G	V	I	N	Q
Template Known Secondary structure												T	T																						.	.	.								S						S	G	G	G	G
Template Predicted Secondary structure																																			.	.	.
Template SS confidence
		295	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.				.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions