|   |
3 | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |
|  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
I | L | I | D | K | N | T | K | V | I | C | Q | G | F | T | G | S | Q | G | T | F | H | S | E | Q | A | I | A | Y | G | T | K | M | V | G | G | V | T | P | G | K | G | G | T | T | H | L | G | L | P | V | F | N | T | V | R | E | A | V | A | A | T | G | A | T | A | S | V | I | Y | V | P | A | P | F | C | K | D | S | I |
Query Conservation |   |
  |
|   |   |   |   |
|   |
|   |
|
|
|   |
|
|
|   |
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |
|   |
|   |   |   |
|   |   |
|   |
|   |   |   |
|   |
|
|   |
|
|   |   |   |   |   |   |
|
|
|
|
|   |
|
|
|   |   |
|   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |
|   |   |
|
|   |
|
|
|   |   |
|   |   |
|   |   |
|   |   |   |   |   |   |   |
|   |   |   |
|
|   |
|   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |
|   |   |   |   |
|   |   |   |   |
|
|   |
|
|
|   |
|
|   |   |   |
|   |   |   |   |
Template Sequence |   |
I | L | V | N | R | E | T | R | V | L | V | Q | G | I | T | G | R | E | G | Q | F | H | T | K | Q | M | L | T | Y | G | T | K | I | V | A | G | V | T | P | G | K | G | G | M | E | V | L | G | V | P | V | Y | D | T | V | K | E | A | V | A | H | H | E | V | D | A | S | I | I | F | V | P | A | P | A | A | A | D | A | A |
Template Known Secondary structure |   |
| S |
|
| T | T |
|  |  |  |  |  | T | T | T | S |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|  |  |  |  |  |  |
| T | T |
| T | T |
|  |  | T | T |  |  |  |  | S | S |  |  |  |  |  |  |  | S |
|
| S |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |
|
|  |  |  |
|
|  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
2 | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . |
  |
  |   |
83 | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . |
Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | E | A | I | D | A | G | I | K | L | I | I | T | I | T | E | G | I | P | T | L | D | M | L | T | V | K | V | K | L | D | E | A | G | V | R | M | I | G |
Query Conservation |   |
  |
|   |   |   |   |
|
|
|   |   |
|
|   |
|   |
|
|   |
|   |   |   |   |   |
|   |   |   |
|   |   |   |
|   |
|
|
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |
|   |   |   |
|   |   |
|
|
|   |   |   |   |
|   |
|   |   |   |   |   |   |
|   |   |   |
|   |   |   |
|   |   |
|
|
|
Template Sequence |   |
L | E | A | A | H | A | G | I | P | L | I | V | L | I | T | E | G | I | P | T | L | D | M | V | R | A | V | E | E | I | K | A | L | G | S | R | L | I | G |
Template Known Secondary structure |   |
 |  |  |  |  | T | T |
| S |  |  |  |  |
|
| S |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |
|  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
82 | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 |
  |