Job Description P39407 Confidence 99.95% Date Thu Jan 5 12:00:43 GMT 2012 Rank 1 Aligned Residues 287 % Identity 17% Template d1oxwa_ SCOP info FabD/lysophospholipase-like FabD/lysophospholipase-like Patatin Resolution 2.20

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		21	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.									50	.	.	.				.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.						.	.	.	80	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.					.	.	.																								.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.	.	.					.	.	.																								.	.	.	.	.
Query Sequence		Q	P	G	R	I	A	L	V	C	E	G	G	G	Q	R	G	I	F	T	A	G	V	L	D	E	F	M	R	A	.	.	.	.	.	.	.	.	Q	F	N	P	.	.	.	F	D	L	Y	L	G	T	S	A	G	A	Q	N	L	S	A	F	I	C	N	Q	P	G	.	.	.	.	.	Y	A	R	K	V	I	M	R
Query Conservation																															.	.	.	.	.	.	.	.					.	.	.																								.	.	.	.	.
Alig confidence																															.	.	.	.	.	.	.	.					.	.	.																								.	.	.	.	.
Template Conservation
Template Sequence		G	E	X	V	T	V	L	S	I	D	G	G	G	I	R	G	I	I	P	A	T	I	L	E	F	L	E	G	Q	L	Q	E	X	D	N	N	A	D	A	R	L	A	D	Y	F	D	V	I	G	G	T	S	T	G	G	L	L	T	A	X	I	S	T	P	N	E	N	N	R	P	F	A	A	A	K	E	I	V	P	F
Template Known Secondary structure			S											G	G	G	G																		T	T		T	T								S						T											S	B		T	T	S	S	B	S	S		G	G	G
Template Predicted Secondary structure
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.									.	.	.	.
Predicted Secondary structure																																																																						.	.	.	.	.	.	.	.
Query SS confidence																																																																						.	.	.	.	.	.	.	.
Query Sequence		Y	T	T	K	R	E	F	F	D	P	L	R	F	V	R	G	G	N	L	I	D	L	D	W	L	V	E	A	T	A	S	Q	M	P	L	Q	M	D	T	A	A	R	L	F	D	S	G	K	S	F	Y	M	C	A	C	R	Q	D	D	Y	A	P	N	Y	F	L	P	T	.	.	.	.	.	.	.	.	K	Q	N	W
Query Conservation																																																																						.	.	.	.	.	.	.	.
Alig confidence																																						.	.	.	.	.																												.	.	.	.	.	.	.	.
Template Conservation																																						.	.	.	.	.
Template Sequence		Y	F	E	H	G	P	Q	I	F	N	P	S	G	Q	I	L	G	P	K	Y	D	G	K	Y	L	X	Q	V	L	Q	E	K	L	G	E	T	.	.	.	.	.	R	V	H	Q	A	L	T	E	V	V	I	S	S	F	D	I	K	T	N	K	P	V	I	F	T	K	S	N	L	A	N	S	P	E	L	D	A	K	X
Template Known Secondary structure										T						S	S	S		S															T	T		.	.	.	.	.	B	G	G	G		S	S									T	T	T	T							S	S	S	T	T	T		G	G	G			B
Template Predicted Secondary structure																																						.	.	.	.	.
Template SS confidence
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.						.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.										180	.	.	.	.	.	.	.		.	.	190	.	.	.	.	.	.																		.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.	.	.	.	.	.	.	.									.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.
Query SS confidence																									.	.	.	.	.	.	.	.	.									.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.
Query Sequence		L	D	V	I	R	A	S	S	A	I	P	G	F	Y	R	S	G	V	S	L	E	G	I	.	.	.	.	.	.	.	.	.	N	Y	L	D	G	G	I	S	.	D	A	I	P	V	K	E	A	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	Q	G	A	K	T	L	V	V	I	R	.	.
Query Conservation																									.	.	.	.	.	.	.	.	.									.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.
Alig confidence																.									.	.	.	.	.	.	.	.	.									.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.
Template Conservation																.
Template Sequence		Y	D	I	S	Y	S	T	A	A	A	P	T	Y	F	.	P	P	H	Y	F	V	T	N	T	S	N	G	D	E	Y	E	F	N	L	V	D	G	A	V	A	T	V	A	D	P	A	L	L	S	I	S	V	A	T	R	L	A	Q	K	D	P	A	F	A	S	I	R	S	L	N	Y	K	K	X	L	L	L	S	L	G
Template Known Secondary structure												T	T	T	S	.										T	T	S										G	G	G	G	T		S	S													T	T	T		G	G	G	T	T	S	T	T			G	G	G
Template Predicted Secondary structure																.
Template SS confidence
		181	.	.	.	.	.	.	.	.	190	.	.	.	.		.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
		208	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.			240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.			270	.	.	.	.	.	.	.	.	.	280	.	.	.
Predicted Secondary structure																																		.	.																															.	.
Query SS confidence																																		.	.																															.	.
Query Sequence		T	V	P	S	Q	M	Y	Y	T	P	Q	W	F	K	R	M	E	R	W	L	G	D	S	S	L	Q	P	L	V	N	L	V	.	.	Q	H	H	E	T	S	Y	R	D	I	Q	Q	F	I	E	K	P	P	G	K	L	R	I	F	E	I	Y	P	P	K	.	.	P	L	H	S	I	A	L	G	S	R	I	P	A	L
Query Conservation																																		.	.																															.	.
Alig confidence																																		.	.																															.	.
Template Conservation
Template Sequence		T	G	T	T	S	E	F	D	K	T	Y	T	A	K	E	A	A	T	W	T	A	V	H	W	X	L	V	I	Q	K	X	T	D	A	A	S	S	Y	X	T	D	Y	Y	L	S	T	A	F	Q	A	L	D	S	K	N	N	Y	L	R	V	Q	E	N	A	L	T	G	T	T	T	E	X	D	D	A	S	E	A	N	X
Template Known Secondary structure					B		T	T	S	S								T	T								T	T																								T	T		G	G	G									B		G	G	G	G		T	T
Template Predicted Secondary structure
Template SS confidence
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.
		284	.	.	.	.	.	290	.	.	.	.	.													.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	E	D	Y	K	L	G	R	L	C	G	R	.	.	.	.	.	.	.	.	.	.	.	.	Y	F	L	A	T	V	G	K	L	L	T	E	K	A	P	L	T	R
Query Conservation														.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	L	L	V	Q	V	G	E	N	L	L	K	K	P	V	S	E	D	N	P	E	T	Y	E	E	A	L	K	R	F	A	K	L	L	S	D	R	K	K	L	R	A
Template Known Secondary structure													T	S	B	S	S	S	S				B
Template Predicted Secondary structure
Template SS confidence
		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions