Job Description P0AFQ7 Confidence 100.00% Date Thu Jan 5 11:27:00 GMT 2012 Rank 13 Aligned Residues 235 % Identity 14% Template c3irsB_ PDB info PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized protein bb4693; PDBTitle: crystal structure of uncharacterized tim-barrel protein bb4693 from2 bordetella bronchiseptica Resolution 1.76 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20																										.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40						.	.	.	.	.	.	.	.	.	50
Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.
Query SS confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.
Query Sequence		M	F	L	V	D	S	H	C	H	L	D	G	L	D	Y	E	S	L	H	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	V	D	D	V	L	A	K	A	A	A	R	D	V	K	F	C	L	A	V	.	.	.	.	.	A	T	T	L	P	G	Y	L	H	M
Query Conservation																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.
Alig confidence																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.
Template Conservation
Template Sequence		L	K	I	I	D	F	R	L	R	P	P	A	M	G	F	L	N	A	R	I	Y	T	R	P	D	I	R	N	R	F	T	R	Q	L	G	F	E	P	A	P	S	A	E	E	K	S	L	E	L	M	F	E	E	M	A	A	A	G	I	E	Q	G	V	C	V	G	R	N	S	S	V	L	G	S	V	S	N	A	D	V
Template Known Secondary structure							S	S	B			S	S	T	T	G	G	G	S																	T									T	T													T												T	T	T
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
Predicted Secondary structure
Query SS confidence
Query Sequence		R	D	L	V	G	E	R	D	N	V	V	F	S	C	G	V	H	P	L	N	Q	N	D	P	Y	D	V	E	D	L	R	R	L	A	A	E	E	G	V	V	A	L	G	E	T	G	L	D	Y	Y	Y	T	P	E	T	K	V	R	Q	Q	E	S	F	I	H	H	I	Q	I	G	R	E	L	N	K	P	V	I	V	H
Query Conservation
Alig confidence																																				.	.	.	.	.
Template Conservation																																				.	.	.	.	.
Template Sequence		A	A	V	A	K	A	Y	P	D	K	F	H	P	V	G	S	I	E	A	A	T	R	K	E	A	M	A	Q	M	Q	E	I	L	D	.	.	.	.	.	L	G	I	R	I	V	N	L	E	P	G	V	W	A	T	P	M	H	V	D	D	R	R	L	Y	P	L	Y	A	F	C	E	D	N	G	I	P	V	I	M	M
Template Known Secondary structure								S	T	T	T										S	S														.	.	.	.	.	T	T								G	G	G	S	S	S				T	T		G	G	G										T	T
Template Predicted Secondary structure																																				.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.						.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		131	.	.										.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.		.	160	.	.	.	.	.	.	.	.	.	170			.	.	.	.	.	.	.	.	.	180	.	.	.	.	.		.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.																										.													.	.																.
Query SS confidence					.	.	.	.	.	.	.	.	.																										.													.	.																.
Query Sequence		T	R	D	.	.	.	.	.	.	.	.	.	A	R	A	D	T	L	A	I	L	R	E	E	K	V	T	D	C	G	G	V	L	H	C	F	T	.	E	D	R	E	T	A	G	K	L	L	D	L	.	.	G	F	Y	I	S	F	S	G	I	V	T	F	R	N	A	.	E	Q	L	R	D	A	A	R	Y	V	P	L
Query Conservation					.	.	.	.	.	.	.	.	.																										.													.	.																.
Alig confidence					.	.	.	.	.	.	.	.	.													.	.												.													.	.																.
Template Conservation																										.	.
Template Sequence		T	G	G	N	A	G	P	D	I	T	Y	T	N	P	E	H	I	D	R	V	L	G	D	F	.	.	P	D	L	T	V	V	S	S	H	G	N	W	P	W	V	Q	E	I	I	H	V	A	F	R	R	P	N	L	Y	L	S	P	D	M	Y	L	Y	N	L	P	G	H	A	D	F	I	Q	A	A	N	S	F	L	A
Template Known Secondary structure			S	S	S		S	S	S	G	G	G	G													.	.	T	T							G	G	G	T	T													T	T						G	G	G	G	S	S	S	T	T									T	T	T	T	T
Template Predicted Secondary structure																										.	.
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.			180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	R	L	L	V	E	T	D	S	P	Y	L	A	P	V	P	H	R	G	K	E	N	Q	P	A	M	V	R	D	V	A	E	Y	M	A	V	L	K	G	V	A	V	E	E	L	A	Q	V	T	T	D	N	F	A	R	L	F	H	I
Query Conservation
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.												.
Template Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.												.
Template Sequence		D	R	M	L	F	G	T	A	Y	P	M	C	P	.	.	.	.	.	.	.	.	.	.	.	.	.	L	K	E	Y	T	E	W	F	L	T	L	.	P	I	K	P	D	A	M	E	K	I	L	H	G	N	A	E	R	L	L	A	Q
Template Known Secondary structure		T	T	B						B	T	S	S		.	.	.	.	.	.	.	.	.	.	.	.	.										T	S	.												T
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.												.
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.														.	.	.	250	.	.	.	.	.	.	.		.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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