Job Description P0AFQ7 Confidence 98.98% Date Thu Jan 5 11:27:00 GMT 2012 Rank 80 Aligned Residues 257 % Identity 15% Template c3dc8B_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:dihydropyrimidinase; PDBTitle: crystal structure of dihydropyrimidinase from sinorhizobium meliloti Resolution 1.85 Å

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		3	.	.	.	.	.	.	10	.	.	.		.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.			.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure													.																										.	.
Query SS confidence													.																										.	.
Query Sequence		L	V	D	S	H	C	H	L	D	G	L	.	D	Y	E	S	L	H	K	D	V	D	D	V	L	A	K	A	A	A	R	D	V	K	F	C	L	.	.	A	V	A	T	T	L	P	G	Y	L	H	M	R	D	L	V	G	E	R	D	N	V	V	F	S	C	G	V	H	P	L	N	Q	N	D	P	Y	D	V	E	D
Query Conservation													.																										.	.
Alig confidence													.																										.	.
Template Conservation
Template Sequence		G	I	D	P	H	T	H	L	E	M	P	F	M	G	T	Y	S	S	D	D	F	E	S	G	T	R	A	A	L	A	G	G	T	T	M	V	V	D	F	A	L	P	S	G	Q	S	L	L	E	A	L	T	M	W	D	N	K	S	T	R	A	N	C	D	Y	S	F	H	M	A	I	T	W	W	G	E	Q	V	F	N
Template Known Secondary structure									T	T				T	T				S													T	T																										T	T	T		S	S										S		S
Template Predicted Secondary structure
Template SS confidence
		52	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.
Predicted Secondary structure																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	R	R	L	A	A	E	E	G	V	V	A	L	G	E	T	G	L	D	Y	Y	Y	T	P	E	T	K	V	R	Q	Q	E	S	F	I	H	H	I	Q	I	G	R	E	L	N	K	P	V	I	V	H	T	R	D	A	R	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	E	M	E	T	I	V	K	D	K	G	I	N	T	F	H	F	M	A	Y	K	G	A	L	M	V	D	D	D	E	M	F	S	S	F	Q	R	C	A	A	L	G	A	L	P	L	V	H	A	E	N	G	D	V	V	A	Q	L	Q	A	K	L	L	A	E	G	N	S	G	P	E	A	H	A	Y	S	R
Template Known Secondary structure		.	.	.	.									S				B			B	S		S	T	T	T	T	B																	T		B				B		S															T	T			S							T	S
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						133	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
									137	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.			.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Predicted Secondary structure		.	.	.	.	.	.	.																										.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.																										.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	D	T	L	A	I	L	R	E	E	K	V	T	D	C	G	G	V	L	H	C	F	T	E	D	R	.	.	E	T	A	G	K	L	L	D	L	G	F	Y	I	S	F	S	G	I	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.																										.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.																										.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		P	A	E	V	E	G	E	A	A	N	R	A	I	M	I	A	D	M	A	G	C	P	V	Y	I	V	H	T	S	C	E	Q	A	H	E	A	I	R	R	A	R	A	K	G	M	R	V	F	G	E	P	L	I	Q	H	L	T	L	D	E	T	E	Y	F	D	K	D	W	D	H	A	A	R	R	V	M	S	P	P	F
Template Known Secondary structure																					T						S	S			S													T	T								B								G	G	G	G	G		S	S							T			S	S
Template Predicted Secondary structure
Template SS confidence
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
			181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.												.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
Predicted Secondary structure		.																																.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.																																.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	T	F	R	N	A	E	Q	L	R	D	A	A	R	Y	V	P	L	D	R	L	L	V	E	T	D	S	P	Y	L	A	P	.	.	.	.	.	.	.	.	.	.	.	V	P	H	R	G	K	E	N	Q	P	A	M	V	R	D	V	A	E	Y	M	A	V	L	K	G	V	A	V	E	E	L	A	Q	V	T	T	D
Query Conservation		.																																.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.																	.	.														.	.	.	.	.	.	.	.	.	.	.
Template Conservation																			.	.
Template Sequence		R	N	K	L	H	Q	D	S	L	W	A	G	L	A	S	G	S	.	.	L	Q	V	V	A	T	D	H	C	A	F	T	T	E	Q	K	R	F	G	V	G	D	F	T	R	I	P	N	G	T	G	G	L	E	D	R	M	P	M	L	W	T	Y	G	V	A	T	G	R	I	T	M	N	E	F	V	A	V	T	S	T
Template Known Secondary structure				G	G	G											T	S	.	.	S				B			B									G	G	G	T	T		G	G	G	S							T	T	T										T	T	T	T	S	S										T
Template Predicted Secondary structure																			.	.
Template SS confidence
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.			.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.
		249	250	.	.	.	.	.	.	.	.			.	260	.	.	.	.	.
Predicted Secondary structure												.	.
Query SS confidence												.	.
Query Sequence		N	F	A	R	L	F	H	I	D	A	.	.	S	R	L	Q	S	I	R
Query Conservation												.	.
Alig confidence												.	.
Template Conservation
Template Sequence		N	I	A	K	I	L	N	I	Y	P	K	K	G	A	I	L	V	G	A
Template Known Secondary structure							T	T		T	T	T	S	S			S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		368	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions