Job Description P0AFQ7 Confidence 98.91% Date Thu Jan 5 11:27:00 GMT 2012 Rank 86 Aligned Residues 239 % Identity 15% Template c3b40A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:probable dipeptidase; PDBTitle: crystal structure of the probable dipeptidase pvdm from2 pseudomonas aeruginosa Resolution 2.00 Å

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		1	.	.	.	.	.	.	.	.	10						.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.																						.	.	.	.	.	50	.	.	.	.
Predicted Secondary structure												.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	F	L	V	D	S	H	C	H	L	.	.	.	.	.	D	G	L	D	Y	E	S	L	H	K	D	V	D	D	V	L	A	K	A	A	A	R	D	V	K	F	C	L	A	V	A	T	T	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	G	Y	L	H	M	R	D	L	V
Query Conservation												.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	L	S	F	D	S	R	I	T	V	P	L	D	F	G	T	T	G	N	E	V	D	K	D	G	P	G	Q	L	D	L	V	K	A	G	R	G	R	L	S	G	A	A	L	A	I	F	G	W	P	E	M	W	P	H	K	P	T	P	G	F	V	D	E	A	R	H	Q	Q	E	I	R	Y	K	I	L	T	G	M	V
Template Known Secondary structure		S											T	T	T	T	B	T	T	B		T	T	S			S	S	S										T																					T	T
Template Predicted Secondary structure
Template SS confidence
		53	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.
		55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.																				.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
Predicted Secondary structure																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.
Query SS confidence																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.
Query Sequence		G	E	R	D	N	V	V	F	S	C	G	V	H	P	L	N	Q	N	D	P	Y	D	V	E	D	L	R	R	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	A	E	E	G	V	V	A	L	G	E	T	G	L	D	Y	Y	Y	T	P	E	T	K	V	R	.	.	.	.	.	.	.
Query Conservation																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.
Template Conservation												.	.	.	.	.	.	.
Template Sequence		R	D	F	P	N	Q	V	G	I	A	.	.	.	.	.	.	.	Y	S	P	E	D	F	R	R	L	A	M	E	G	K	F	A	I	V	M	S	M	L	N	A	Y	P	L	G	D	D	L	S	Q	L	D	K	W	A	A	R	G	V	R	M	F	G	F	S	Y	V	G	N	N	D	W	A	D	S	S	R	P	L	P
Template Known Secondary structure					T	T	T					.	.	.	.	.	.	.	S	S										T	T											S	G	G	G	T	T		T									T	T								S	S	S			S	S	B		B	S	S			G
Template Predicted Secondary structure												.	.	.	.	.	.	.
Template SS confidence
		138	.	140	.	.	.	.	.	.	.								.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
													109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.											160	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																						.																															.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.																						.																															.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	Q	Q	E	S	F	I	H	H	I	Q	I	G	R	E	L	N	K	P	V	I	V	.	H	T	R	D	A	R	A	D	T	L	A	I	L	R	E	E	K	V	T	D	C	G	G	V	L	H	C	F	T	E	.	.	.	.	.	.	.	.	.	.	D	R	E	T	A	G	K
Query Conservation		.	.	.	.	.	.	.	.	.	.	.																						.																															.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																						.				.	.															.	.	.									.	.	.	.	.	.	.	.	.	.
Template Conservation																																						.	.															.	.	.
Template Sequence		F	F	N	D	S	P	D	A	L	G	G	L	S	P	L	G	K	Q	A	V	E	R	L	N	D	L	G	V	I	I	D	V	S	Q	M	S	.	.	T	K	A	L	E	Q	V	A	A	L	S	R	A	P	.	.	.	I	V	A	S	H	S	A	P	R	A	L	V	D	I	K	R	N	L	S	D	H	E	M	Q	L
Template Known Secondary structure		G	G	T			T	T	T	T	S	S	B															T						T	T	B		.	.												S	S		.	.	.								B	T	T	T	S			T	T	S	B
Template Predicted Secondary structure																																						.	.															.	.	.
Template SS confidence
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.			.	.	.	250	.	.	.	.	.	.	.	.	.	260				.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	L	D	L	G	F	Y	I	S	F	S	G	I	V	T	F	R	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	K	D	S	G	G	V	I	Q	V	V	G	F	P	A	Y	L	R	P	L	S	K	P	T	L	D	K	L	D	A	L	R	A	R	F	D	L	P	P	L	E	G	L	D	Y	A	L	M	P	G	D	P	I	I	T	I	W	P	E	Q	R	F	G	E	Y	A	S	A	L	Y	G	I	L	E	E	E	P	K	A	G
Template Known Secondary structure					T	T													S																	T	T						S	S	T	T	T	S	S				G	G	G	G	G	S																		T	S				B
Template Predicted Secondary structure
Template SS confidence
		286	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.
						185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	A	E	Q	L	R	D	A	A	R	Y	V	P	L	D	R	L	L	V	E	T	D	S	P	Y	L	A	P	V	P	H	R	G	K	E	N	Q	P	A	M	V	R	D	V	A	E	Y	M	A	V	L	K	G	V	A	V	E	E	L	A	Q	V	T	T	D	N	F	A	R	L	F	H
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.																												.	.	.																					.
Template Conservation																																	.	.	.																					.
Template Sequence		L	K	E	L	V	D	A	I	D	Y	T	V	K	K	V	G	I	D	H	V	G	I	S	S	D	F	N	D	G	G	G	.	.	.	V	D	G	W	K	D	V	S	E	I	R	N	V	T	A	E	L	I	T	R	.	G	Y	S	D	A	D	I	A	K	L	W	G	G	N	F	L	R	A	W	G
Template Known Secondary structure																		G	G	G							B	T	T	T			.	.	.	B	B	T	B		S	G	G	G												.	T										T	T
Template Predicted Secondary structure																																	.	.	.																					.
Template SS confidence
		366	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.				.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.		.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions