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Job DescriptionP0AFQ7
Confidence97.61%DateThu Jan 5 11:27:00 GMT 2012
Rank132Aligned Residues240
% Identity12%Templatec2ubpC_
PDB info PDB header:hydrolaseChain: C: PDB Molecule:protein (urease alpha subunit); PDBTitle: structure of native urease from bacillus pasteurii
Resolution2.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30.........40..... ....50.........60.........70..
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Query Sequence  LVDSHCHLDGLDYESLHKDVDDVLAKAAARDVKFCLAVATTLP. . . . . . . . . . GYLHMRDLVGERDNVVFSCGVHPLNQN
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Template Sequence  GIDTHVHFINP. . . . . . . . . . DQVDVALANGITTLFGGGTGPAEGSKATTVTPGPWNIEKMLKSTEGLPINVGILGKGHG
Template Known Secondary structure 


T..........TTT
SSS
SS


TT
SSB




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   133......140... ......150.........160.........170.........180.........190.........200..
 
   73......80.........90.........100.........110.........120.........130.........140.........150..
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Query Sequence  DPYDVEDLRRLAAEEGVVALGETGLDYYYTPETKVRQQESFIHHIQIGRELNKPVIVHTRDARADTLAILREEKVTDCGG
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Template Sequence  SSIAPIMEQIDAGAAGLI. . . . . . . . . . . . HEDWGATPASIDRSLTVADEADVQVAIHSDTLNEAGFLEDTLRAINGRVI
Template Known Secondary structure  SSSTT

B

............BGGG


T
B
B

TT
SS

TT

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   203......210.........220 .........230.........240.........250.........260.........270
 
   153..... .160.........170.........180..... ....190..
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Query Sequence  VLHCFT. . . . EDRETAGKLLDLGFYISFSGIVTFRNA. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . EQLRDAA
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Template Sequence  HSFHVEGAGGGHAPDIMAMAGHPNVLPSSTNPTRPFTVNTIDEHLDMLMVCHHLKQNIPEDVAFADSRIRPETIAAEDIL
Template Known Secondary structure  TTTTSTTS
STTTGGGGGG
TTB

STTSS
BTTTT

TTSS
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   272.......280.........290.........300.........310.........320.........330.........340.........350.
 
   193......200.........210.........220.........230 .........240.........250........ .260....
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Query Sequence  RYVPLDRLLVETDSPYLAPVPHRGKENQPAMVRDVAEY. . . . . . MAVLKGVAVEELAQVTTDNFARLFHIDA. . SRLQSI
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Template Sequence  HDLGI. ISMMSTDALAMGRAGEMVLRTWQTADKMKKQRGPLAEEKNGSDNFRLKRYVSKYTINPAIAQGIAHEVGSIEEG
Template Known Secondary structure  TTS.S
B



BTTSS
TT

S
TT

SS

TT
TTTSSS

TT
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   352.... ...360.........370.........380.........390.........400.........410.........420.........430
 
   265
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Query Sequence  R
Query Conservation   
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Template Conservation 
Template Sequence  K
Template Known Secondary structure  S
Template Predicted Secondary structure 
Template SS confidence 
   431
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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