Phyre 2 alignment of P0AFQ7 with c2oodA

Job Description P0AFQ7
Confidence 98.58% Date Thu Jan 5 11:27:00 GMT 2012

Rank 107 Aligned Residues 263

% Identity 14% Template c2oodA_

PDB info PDB header:hydrolase Chain: A: PDB Molecule:blr3880 protein; PDBTitle: crystal structure of guanine deaminase from bradyrhizobium japonicum

Resolution 2.62 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.																											.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	L	V	D	S	H	C	H	L	D	G	L	D	Y	E	S	L	H	K	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	D	D	V	L	A	K	A	A	A	R	D	V	K	F	C	L	A	V	A	T	T	L	P	G	Y	L	H	M	R	D	L	V	G	E
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	F	I	D	G	H	I	H	L	P	Q	T	R	V	L	G	A	Y	G	E	Q	L	L	P	W	L	Q	K	S	I	Y	P	E	E	I	K	Y	K	D	R	N	Y	A	R	E	G	V	K	R	F	L	D	A	L	L	A	A	G	T	T	T	C	Q	A	F	T	S	S	S	P	V	A	T	E	E	L	F	E	E	A	S
Template Known Secondary structure								G	G	G	T	T		T	T			S											T					G	G	G	G	S																		T	T										S	S
Template Predicted Secondary structure
Template SS confidence
	75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.

	57	.	.	60	.	.	.	.	.	.						.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.		.	.	.	.	.	.	130
Predicted Secondary structure											.	.	.	.	.																																																										.
Query SS confidence											.	.	.	.	.																																																										.
Query Sequence	R	D	N	V	V	F	S	C	G	V	.	.	.	.	.	H	P	L	N	Q	N	D	P	Y	D	V	E	D	L	R	R	L	A	A	E	E	G	V	V	A	L	G	E	T	G	L	D	Y	Y	Y	T	P	E	T	K	V	R	Q	Q	E	S	F	I	H	H	I	Q	I	G	R	E	L	.	N	K	P	V	I	V	H
Query Conservation											.	.	.	.	.																																																										.
Alig confidence											.	.	.	.	.																																																										.
Template Conservation
Template Sequence	R	R	N	X	R	V	I	A	G	L	T	G	I	D	R	N	A	P	A	E	F	I	D	T	P	E	N	F	Y	R	D	S	K	R	L	I	A	Q	Y	H	D	K	G	R	N	L	Y	A	I	T	P	R	F	A	F	G	A	S	P	E	L	L	K	A	C	Q	R	L	K	H	E	H	P	D	C	W	V	N	T	H
Template Known Secondary structure			T												S	S	S		T	T	T																			T	T	B	T	T									B	G	G	G																	T	T	S
Template Predicted Secondary structure
Template SS confidence
	155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.

	131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.															150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.				.	.	.	190	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.
Query SS confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.
Query Sequence	T	R	D	A	R	A	D	T	L	A	I	L	R	E	E	K	V	T	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	C	G	G	V	L	H	C	F	T	E	D	R	E	T	A	G	K	L	L	D	L	G	F	Y	I	S	F	S	G	I	V	T	F	R	N	A	E	.	.	.	Q	L	R	D	A	A	R
Query Conservation																				.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.
Alig confidence																				.	.	.	.	.	.	.	.	.	.	.	.	.	.																																						.	.	.
Template Conservation
Template Sequence	I	S	E	N	P	A	E	C	S	G	V	L	V	E	H	P	D	C	Q	D	Y	L	G	V	Y	E	K	F	D	L	V	G	P	K	F	S	G	G	H	G	V	Y	L	S	N	N	E	F	R	R	X	S	K	K	G	A	A	V	V	F	C	P	C	S	N	L	F	L	G	S	G	L	F	R	L	G	R	A	T	D
Template Known Secondary structure		S														T	T		S	S							T	T	T			S	T	T							T	T													T													T	T										T
Template Predicted Secondary structure
Template SS confidence
	235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.

	194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.															230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.
Query SS confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.
Query Sequence	Y	V	P	L	D	R	L	L	V	E	T	D	S	P	Y	L	A	P	V	P	H	R	G	K	E	N	Q	P	A	M	V	R	D	V	A	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	M	A	V	L	K	G	V	A	V	E	E	L	A	Q	V	T	T	D	N	F	A	R	L	F	H	I	D	A	.
Query Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.
Alig confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.
Template Conservation
Template Sequence	P	E	H	R	V	K	X	S	F	G	T	D	V	G	G	G	N	R	F	S	X	I	S	V	L	D	D	A	Y	K	V	G	X	C	N	N	T	L	L	D	G	S	I	D	P	S	R	K	D	L	A	E	A	E	R	N	K	L	S	P	Y	R	G	F	W	S	V	T	L	G	G	A	E	G	L	Y	I	D	D	K
Template Known Secondary structure	T	T	S										B	T	T	B	S																						S	S	S	S	S		G	G	G									T											T	T							T	T		T	T	T
Template Predicted Secondary structure
Template SS confidence
	315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.

		259	260	.	.	.	.	.
Predicted Secondary structure	.
Query SS confidence	.
Query Sequence	.	S	R	L	Q	S	I	R
Query Conservation	.
Alig confidence	.
Template Conservation
Template Sequence	L	G	N	F	E	P	G	K
Template Known Secondary structure	S	S	S			T	T	S
Template Predicted Secondary structure
Template SS confidence
	395	.	.	.	.	400	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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