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Job DescriptionP0AFQ7
Confidence98.96%DateThu Jan 5 11:27:00 GMT 2012
Rank81Aligned Residues258
% Identity15%Templatec1r9yA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:cytosine deaminase; PDBTitle: bacterial cytosine deaminase d314a mutant.
Resolution1.57 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20. ........30.........40 .........50
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Query Sequence  LVDSHCHLDGLDYESLHKD. . . . . . . . . . . . . . . . . . . . . . . . . . . . VDDVLAKAAARDVKFCLAV. . . . ATTLPGYLHM
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Template Sequence  FVEPHIHLDTTQTAGQPNWNQSGTLFEGIERWAERKALLTHDDVKQRAWQTLKWQIANGIQHVRTHVDVSDATLTALKAM
Template Known Secondary structure 
TTTTT
TTSSS

SS

TTGGG

TT

STT
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   57..60.........70.........80.........90.........100.........110.........120.........130......
 
   51........60.........70.........80.........90.........100.........110.........120.........130
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Query Sequence  RDLVGERDNVVFSCGVHPLNQNDPYDVEDLRRLAAEEGVVALGETGLDYYYTPETKVRQQESFIHHIQIGRELNKPVIVH
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Template Sequence  LEVKQEVAPWIDLQIVAFPQEGILSYPNGEALLEEALRLGADVVGAIPHF. . EFTREYGVESLHKTFALAQKYDRLIDVH
Template Known Secondary structure  TTT

TT
SSSSTTTT
S
GGG..SSST
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   137..140.........150.........160.........170.........180...... ...190.........200.........210....
 
   131 ........140.........150.........160 .........170.........180.. ..
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Query Sequence  T. . . . . . . RDARADTLAILREEKVTDCGGVLHCFTED. . . . . . . RETAGKLLDLGFYISFSGIVTF. . . . . . . . . . . . RN
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Template Conservation                                                               
                  
Template Sequence  CDEIDDEQSRFVETVAALAHHEGMGARVTASHTTAMHSYNGAYTSRLFRLLKMSGINFVANPLVNIHLQGRFDTYPKRRG
Template Known Secondary structure 

SS
TT

T
GGG
GGGGGS
T

TTTT

SS



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   215....220.........230.........240.........250.........260.........270.........280.........290....
 
   185....190.........200.........210.........220.........230.........240.........250.........260....
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Query Sequence  AEQLRDAARYVPLDRLLVETDSPYLAPVPHRGKENQPAMVRDVAEYMAVLKGVAVEELAQVTTDNFARLFHIDASRLQSI
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Template Sequence  ITRVKEMLESGI. . NVCFGHDAV. FDPWYPLGTANMLQVLHMGLHVCQLMGYGQINDGLNLITHHSARTLNLQDYGIAAG
Template Known Secondary structure 


T
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B
S.SBTTB



S
TT

SGGGGGGTTT
SS
SS
TT
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   295....300...... ...310..... ....320.........330.........340.........350.........360.........370.
 
   265
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Query Sequence  R
Query Conservation   
Alig confidence 
Template Conservation   
Template Sequence  N
Template Known Secondary structure  S
Template Predicted Secondary structure 
Template SS confidence 
   372
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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