Phyre 2 alignment of P0AFQ7 with c1k1dF

Job Description P0AFQ7
Confidence 98.88% Date Thu Jan 5 11:27:00 GMT 2012

Rank 87 Aligned Residues 262

% Identity 15% Template c1k1dF_

PDB info PDB header:hydrolase Chain: F: PDB Molecule:d-hydantoinase; PDBTitle: crystal structure of d-hydantoinase

Resolution 3.01 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	3	.	.	.	.	.	.	10	.	.	.	.	.		.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40						.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.
Predicted Secondary structure														.																										.	.	.	.	.
Query SS confidence														.																										.	.	.	.	.
Query Sequence	L	V	D	S	H	C	H	L	D	G	L	D	Y	.	E	S	L	H	K	D	V	D	D	V	L	A	K	A	A	A	R	D	V	K	F	C	L	A	V	.	.	.	.	.	A	T	T	L	P	G	Y	L	H	M	R	D	L	V	G	E	R	D	N	V	V	F	S	C	G	V	H	P	L	N	Q	N	D	P	Y	D
Query Conservation														.																										.	.	.	.	.
Alig confidence														.																										.	.	.	.	.
Template Conservation
Template Sequence	G	I	D	P	H	T	H	L	D	M	P	L	G	G	T	V	T	K	D	D	F	E	S	G	T	I	A	A	A	F	G	G	T	T	T	I	I	D	F	C	L	T	N	K	G	E	P	L	K	K	A	I	E	T	W	H	N	K	A	N	G	K	A	V	I	D	Y	G	F	H	L	M	I	S	E	I	T	D	D	V
Template Known Secondary structure								S	S				S	S	S			S	S												T	T												T	T	S														T	T	T		S	S									S
Template Predicted Secondary structure
Template SS confidence
	54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.

	77	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.																																																			.	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	V	E	D	L	R	R	L	A	A	E	E	G	V	V	A	L	G	E	T	G	L	D	Y	Y	Y	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	E	T	K
Query Conservation																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	L	E	E	L	P	K	V	L	E	E	E	G	I	T	S	L	V	F	M	A	Y	K	N	V	F	Q	A	D	D	G	T	L	Y	C	T	L	L	A	A	K	E	L	G	A	L	V	M	V	H	A	E	N	G	D	V	I	D	Y	L	T	K	K	A	L	A	D	G	N	T	D	P	I	Y	H	A	L	T	R	P	P
Template Known Secondary structure										S	S				B			B	S	S	S	T	T	T	T	B																	T		B				B																	T	T			S	T						T	S
Template Predicted Secondary structure
Template SS confidence
	134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.

	107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.			.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.		.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure																															.	.																			.
Query SS confidence																															.	.																			.
Query Sequence	V	R	Q	Q	E	S	F	I	H	H	I	Q	I	G	R	E	L	N	K	P	V	I	V	H	T	R	D	A	R	A	.	.	D	T	L	A	I	L	R	E	E	K	V	T	D	C	G	G	V	L	.	H	C	F	T	E	D	R	E	T	A	G	K	L	L	D	L	G	F	Y	I	S	F	S	G	I	V	T	F	R
Query Conservation																															.	.																			.
Alig confidence																															.	.																			.
Template Conservation
Template Sequence	E	L	E	G	E	A	T	G	R	A	C	Q	L	T	E	L	A	G	S	Q	L	Y	V	V	H	V	T	C	A	Q	A	V	E	K	I	A	E	A	R	N	K	G	L	D	V	W	G	E	T	C	P	Q	Y	L	V	L	D	Q	S	Y	L	E	K	P	N	F	E	G	A	K	Y	V	W	S	P	P	L	R	E	K
Template Known Secondary structure																		T							S			S													T	T																G	G	G	G	T	S	S	T	T	G	G	G	G	G			S	S					T
Template Predicted Secondary structure
Template SS confidence
	215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.

	184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.													.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	N	A	E	Q	L	R	D	A	A	R	Y	V	P	L	D	R	L	L	V	E	T	D	S	P	Y	L	A	P	V	P	H	.	.	.	.	.	.	.	.	.	.	.	.	R	G	K	E	N	Q	P	A	M	V	R	D	V	A	E	Y	M	A	V	L	K	G	V	A	V	E	E	L	A	Q	V	T	T	D	N	F	A
Query Conservation																																.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.																		.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation														.
Template Sequence	W	H	Q	E	V	L	W	N	A	L	K	N	G	.	Q	L	Q	T	L	G	S	D	Q	C	S	F	D	F	K	G	Q	K	E	L	G	R	G	D	F	T	K	I	P	N	G	G	P	I	I	E	D	R	V	S	I	L	F	S	E	G	V	K	K	G	R	I	T	L	N	Q	F	V	D	I	V	S	T	R	I	A
Template Known Secondary structure	T												T	.	S	S							B					T	T	T	T	G	G	G	G	S	S		G	G	G	S				B			T	T	T									T	G	G	G	T	S	S										T
Template Predicted Secondary structure														.
Template SS confidence
	295	.	.	.	.	300	.	.	.	.	.	.	.		.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.

	252	.	.	.	.	.	.			.	260	.	.	.	.	.
Predicted Secondary structure								.	.
Query SS confidence								.	.
Query Sequence	R	L	F	H	I	D	A	.	.	S	R	L	Q	S	I	R
Query Conservation								.	.
Alig confidence								.	.
Template Conservation
Template Sequence	K	L	F	G	L	F	P	K	K	G	T	I	V	V	G	S
Template Known Secondary structure			T	T		T	T	T	S	S			S	T	T	S
Template Predicted Secondary structure
Template SS confidence
	374	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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