 |
Job Description | P15373 | Confidence | 18.67% | Date | Thu Jan 5 11:34:46 GMT 2012 |
Rank | 72 | Aligned Residues | 33 |
% Identity | 36% | Template | c3bmbB_ |
PDB info |
PDB header:rna binding protein | Chain: B: PDB Molecule:regulator of nucleoside diphosphate kinase; |
PDBTitle: crystal structure of a new rna polymerase interacting2 protein
|
Resolution | 1.91 Å |
|
  |   |
30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
R | E | A | L | K | L | K | P | G | Q | D | S | I | H | Y | E | I | L | P | G | G | Q | V | F | M | C | R | L | G | D | E | Q | E | D | H |
Query Conservation |   |
|   |   |
|
|
|
|   |
|   |
|
|
|   |
|   |
|   |   |
|
|   |
|   |
|   |   |
|   |   |   |   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|
|
|   |   |   |
| . |
|   |
|   |   |   |   | . |
|   |
|   |   |   |   |   |   |
|   |   |
|   |   |
|
|
Template Sequence |   |
A | A | L | L | G | L | R | V | G | . |
D | S | I | H | W | E | L | . |
P | G | G | V | A | T | H | L | E | V | L | E | L | E | Y | Q | P |
Template Known Secondary structure |   |
 |  |  | T | T |
| B | T | T | . |
|  |  |  |  |  |  | . | T | T | T |  |  |  |  |  |  |  |  |  |  |  |  |
| T |
Template Predicted Secondary structure |   |
 |  |  |
|
|
|
|
|
| . |
|  |  |  |  |  |
| . |
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
96 | . | . | . | 100 | . | . | . | . | |
. | . | . | . | . | 110 | . | |
. | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|