Job Description P77150 Confidence 99.80% Date Wed Jan 25 15:21:10 GMT 2012 Rank 28 Aligned Residues 221 % Identity 19% Template c3lhxA_ PDB info PDB header:transferase Chain: A: PDB Molecule:ketodeoxygluconokinase; PDBTitle: crystal structure of a ketodeoxygluconokinase (kdgk) from2 shigella flexneri Resolution 1.87 Å

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		3	.	.	.	.	.	.	10										.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.					30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.																				.	.	.	.
Query SS confidence										.	.	.	.	.	.	.	.	.																				.	.	.	.
Query Sequence		K	N	I	L	A	I	Q	S	.	.	.	.	.	.	.	.	.	H	V	V	Y	G	H	A	G	N	S	A	A	E	F	P	M	R	R	L	.	.	.	.	G	A	N	V	W	P	L	N	T	V	Q	F	S	N	H	T	Q	Y	G	K	W	T	G	C	V	M	P	P	S	H	L	T	E	I	V	Q	G	I	A	A
Query Conservation										.	.	.	.	.	.	.	.	.																				.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.														.						.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	K	I	A	V	I	G	E	C	X	I	E	L	S	E	D	V	K	R	G	F	G	G	D	T	L	N	T	S	V	.	Y	I	A	R	Q	V	D	P	A	A	L	T	V	H	Y	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	A	L	G	T	D	S	F	S	Q	Q	X	L	D	A	W	H	G
Template Known Secondary structure								S																								.				T	T	S		T	T	T							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S	S												T
Template Predicted Secondary structure																																.																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.		.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.																.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
		70	.	.	.	.	.																																																	.	.	.	.	80	.	.					.	.	.	.	.	.	.	90	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.
Query Sequence		I	D	K	L	H	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	C	D	A	V	L	S	G	.	.	.	.	Y	L	G	S	A	E	Q	G	E	H	I	L	G	I	V
Query Conservation								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.
Template Conservation
Template Sequence		E	N	V	D	T	S	L	T	Q	R	X	E	N	R	L	P	G	L	Y	Y	I	E	T	E	R	T	F	Y	Y	W	R	N	E	A	A	A	K	F	W	L	A	S	E	Q	S	A	A	I	C	E	E	L	A	N	F	D	Y	L	Y	L	S	G	I	S	L	A	I	L	S	P	T	S	R	E	K	L	L	S	L	L
Template Known Secondary structure		T	T				T	T					T	T																			T	T		G	G	G	G	T	T	S	S	S	S									T	T		S											T	S
Template Predicted Secondary structure
Template SS confidence
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
		98	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Q	V	K	A	A	N	P	Q	A	K	Y	F	C	D	P	V	M	G	H	P	E	K	G	C	I	V	A	P	G	V	A	E	F	H	V	R	H	G	L	P	A	S	D	I	I	A	P	N	L	V	E	L	E	I	L	C	E	H	A	V	N	N	V	E	E	A	V	L	A	A	R	E	L	I	A	Q	G	P	Q
Query Conservation
Alig confidence								.	.														.	.	.																																				.	.	.	.	.
Template Conservation								.	.														.	.	.																																				.	.	.	.	.
Template Sequence		R	E	C	R	A	K	.	.	G	G	K	V	I	F	D	N	N	Y	R	P	R	.	.	.	L	W	A	S	K	E	E	T	Q	Q	V	Y	Q	Q	X	L	E	C	T	D	I	A	F	L	T	L	D	D	E	D	A	L	W	G	Q	.	.	.	.	.	Q	P	V	E	D	V	I	A	R	T	H	N	A	G	V	K
Template Known Secondary structure							T	.	.	T											G	G	.	.	.	G	S	S														T	T		S																.	.	.	.	.													T	T		S
Template Predicted Secondary structure								.	.														.	.	.																																				.	.	.	.	.
Template SS confidence
		227	.	.	230	.	.			.	.	.	.	.	.	.	240	.	.	.	.	.				.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280						.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.			.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure																																	.	.
Query SS confidence																																	.	.
Query Sequence		I	V	L	V	K	H	L	A	R	A	G	Y	S	R	D	R	F	E	M	L	L	V	T	A	D	E	A	W	H	I	S	.	.	R	P	L	V	D	F	G	M	R	Q	P	V	G	V	G	D	V	T	S	G	L	L	L	V	K	L	L	Q	G	A	T	L	Q	E	A	L	E	H	V	T	A	A	V	Y	E	I	M
Query Conservation																																	.	.
Alig confidence													.	.	.	.	.	.	.	.													.	.
Template Conservation													.	.	.	.	.	.	.	.
Template Sequence		E	V	V	V	K	R	G	A	D	S	C	.	.	.	.	.	.	.	.	L	V	S	I	A	G	E	A	L	V	D	V	P	A	V	K	L	P	K	E	K	V	I	D	T	T	A	A	G	D	S	F	S	A	G	Y	L	A	V	R	L	T	G	G	S	A	E	N	A	A	K	R	G	H	L	T	A	S	T	V	I
Template Known Secondary structure								T	T				.	.	.	.	.	.	.	.					T	T	S												G	G	G					T	T														T	T	T																		T
Template Predicted Secondary structure													.	.	.	.	.	.	.	.
Template SS confidence
		297	.	.	300	.	.	.	.	.	.	.									.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.
		256	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	Y
Template Known Secondary structure		T	S
Template Predicted Secondary structure
Template SS confidence
		369	370

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions