Job Description P77150 Confidence 99.21% Date Wed Jan 25 15:21:10 GMT 2012 Rank 62 Aligned Residues 222 % Identity 16% Template c3k5wA_ PDB info PDB header:transferase Chain: A: PDB Molecule:carbohydrate kinase; PDBTitle: crystal structure of a carbohydrate kinase (yjef family)from2 helicobacter pylori Resolution 2.60 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	I	L	A	I	Q	S	H	V	V	Y	G	H	A	G	N	S	A	A	E	F	P	M	R	R	L	G	A	N	V	W	P	L	N	T	V	Q	F	S	N	H	T	Q	Y	G	K	W	T	G	C	V	M	P	P	S	H	L	T	E	I	V	Q	G	I	A	A	I	D	K	L	H	T	C	D	A	V	L	S	G	Y
Query Conservation
Alig confidence										.	.														.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.														.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		H	A	H	V	L	L	G	K	.	.	H	S	G	A	G	L	L	S	A	L	S	A	L	.	S	F	G	S	G	V	V	S	V	Q	A	L	E	C	E	I	T	S	N	N	K	P	L	E	L	V	F	C	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	F	P	N	L	L	S	A	F	A	L	G	X
Template Known Secondary structure									S	.	.	S													.		T	T		S							S	S	S			S	S	S	S	S		T	T	S				S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S			S	S		S						T
Template Predicted Secondary structure										.	.														.																														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		237	.	.	240	.	.	.	.			.	.	.	.	.	250	.	.	.	.	.	.	.		.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.															.	.	.	290	.	.	.	.	.	.	.	.	.
			84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure		.																																																																														.	.
Query SS confidence		.																																																																														.	.
Query Sequence		.	L	G	S	A	E	Q	G	E	H	I	L	G	I	V	R	Q	V	K	A	A	N	P	Q	A	K	Y	F	C	D	P	V	M	G	H	P	E	K	G	C	I	V	A	P	G	V	A	E	F	H	V	R	H	G	L	P	A	S	D	I	I	A	P	N	L	V	E	L	E	I	L	C	E	H	A	V	N	N	.	.
Query Conservation		.																																																																														.	.
Alig confidence		.															.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.																																					.	.
Template Conservation																	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	L	E	N	I	P	K	D	F	N	R	W	L	E	L	.	.	.	.	.	.	.	.	.	A	P	C	V	L	D	.	.	.	.	.	.	.	.	.	.	.	.	A	G	V	F	Y	H	K	E	I	L	Q	A	L	E	K	E	A	V	L	T	P	H	P	K	E	F	L	S	L	L	N	L	V	G	I	N	I	S
Template Known Secondary structure		T		S	S			T	T								.	.	.	.	.	.	.	.	.	S						.	.	.	.	.	.	.	.	.	.	.	.	G	G	G	G	G	S	G	G	G	G	T	T	T	T	S	S																	T	S
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		300	.	.	.	.	.	.	.	.	.	310	.	.	.	.										.	.	.	.	.	320													.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.
				161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	V	E	E	A	V	L	A	A	R	E	L	I	A	Q	G	P	Q	I	V	L	V	K	H	L	A	R	A	G	Y	S	R	D	R	F	E	M	L	L	V	T	A	D	E	A	W	H	I	S	R	P	L	V	D	F	G	M	R	Q	P	V	G	V	G	D	V	T	S	G	L	L	L	V	K	L	L	Q	G	A
Query Conservation		.	.
Alig confidence		.	.																											.	.	.	.	.	.	.	.	.																	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.	.																	.	.	.
Template Sequence		X	L	E	L	L	D	N	K	L	A	R	D	F	S	Q	K	Y	P	K	V	V	L	L	L	K	G	A	N	.	.	.	.	.	.	.	.	.	T	L	I	A	H	Q	G	Q	V	F	I	N	I	L	G	S	.	.	.	V	A	L	A	K	A	G	S	G	D	V	L	A	G	L	I	L	S	L	L	S	Q	N	Y
Template Known Secondary structure		T	T	S	G	G	G	S											T	T							S	S	S	.	.	.	.	.	.	.	.	.						T	T										.	.	.	G	G	G		S	T	T															T	T
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.																	.	.	.
Template SS confidence
		359	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.										.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.				.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.
		239	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.			.	.	.	.	.	.	.	.	270	.	.	.	.	.	.
Predicted Secondary structure																									.	.
Query SS confidence																									.	.
Query Sequence		T	L	Q	E	A	L	E	H	V	T	A	A	V	Y	E	I	M	V	T	T	K	A	M	.	.	Q	E	Y	E	L	Q	V	V	A	A	Q	D	R	I	A
Query Conservation																									.	.
Alig confidence											.														.	.
Template Conservation											.
Template Sequence		T	P	L	D	A	A	I	N	A	.	S	L	A	H	A	L	A	S	L	E	F	K	N	N	Y	A	L	T	P	L	D	L	I	E	K	I	K	Q	L	E
Template Known Secondary structure											.							G	G	G	G		S	S	T	T													T
Template Predicted Secondary structure											.
Template SS confidence
		429	430	.	.	.	.	.	.	.		.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions