Job Description P77150 Confidence 99.61% Date Wed Jan 25 15:21:10 GMT 2012 Rank 56 Aligned Residues 207 % Identity 17% Template c3bf5A_ PDB info PDB header:transferase Chain: A: PDB Molecule:ribokinase related protein; PDBTitle: crystal structure of putative ribokinase (10640157) from thermoplasma2 acidophilum at 1.91 a resolution Resolution 1.91 Å

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		15	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.
Predicted Secondary structure																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	H	A	G	N	S	A	A	E	F	P	M	R	R	L	G	A	N	V	W	P	L	N	T	V	Q	F	S	N	H	T	Q	Y	G	K	W	T	G	C	V	M	P	P	S	H	L	T	E	I	V	Q	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence											.																.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation											.																.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	G	T	A	G	N	F	A	I	.	V	A	Q	K	F	R	I	P	F	D	L	Y	S	A	V	.	.	.	.	.	.	.	.	.	.	.	.	G	X	K	T	H	R	E	Y	L	A	X	I	E	S	X	G	I	N	T	G	H	V	E	K	F	E	D	E	S	G	P	I	C	Y	I	A	T	D	G	K	K	Q	V
Template Known Secondary structure											.					T	T										.	.	.	.	.	.	.	.	.	.	.	.		T	T	T											T	T				T	T					T	T				S								S	S
Template Predicted Secondary structure											.																.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		37	.	.	40	.	.	.	.	.		.	.	.	.	50	.	.	.	.	.	.	.	.	.	60													.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
											67	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	I	A	A	I	D	K	L	H	T	C	D	A	V	L	S	G	Y	L	G	S	A	E	Q	G	E	H	I	L	G	I	V	R	Q	V	K	A	A	N	P	Q	A	K	Y	F	C	D	P	V	M	G	H	P	E	K	G	C	I	V	A	P	G	V	A	E	F	H	V	R	H	G	L
Query Conservation		.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.									.	.									.	.	.	.	.	.	.	.
Template Conservation																															.	.	.	.	.	.	.	.	.									.	.									.	.	.	.	.	.	.	.
Template Sequence		S	F	X	H	Q	G	A	X	A	A	W	A	P	Q	L	A	D	E	Y	E	Y	V	H	F	S	T	G	P	N	.	.	.	.	.	.	.	.	.	Y	L	D	X	A	K	S	I	.	.	R	S	K	I	I	F	D	P	.	.	.	.	.	.	.	.	S	Q	E	I	H	K	Y	S	K	D	E	L	K	K	F	H
Template Known Secondary structure							T											S									S	S	S	S	.	.	.	.	.	.	.	.	.									.	.		S							.	.	.	.	.	.	.	.	G	G	G	G	G	G	S
Template Predicted Secondary structure																															.	.	.	.	.	.	.	.	.									.	.									.	.	.	.	.	.	.	.
Template SS confidence
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.										.	.	.	.	.	.	.	140			.	.	.	.	.	.	.	.									.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	S	D	I	I	A	P	N	L	V	E	L	E	I	L	C	E	H	A	V	N	N	V	E	E	A	V	L	A	A	R	E	L	I	A	Q	G	P	Q	I	V	L	V	K	H	L	A	R	A	G	Y	S	R	D	R	F	E	M	L	L	V	T	A	D	E	A	W	H	I	S	R	P	L	V	D	F	G	M	R
Query Conservation
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.																		.	.	.
Template Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.																		.	.	.
Template Sequence		E	I	S	Y	X	S	I	F	N	D	H	E	Y	R	V	F	R	E	X	T	G	L	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	P	K	V	T	T	I	V	T	N	G	E	R	G	S	.	.	.	.	.	.	.	.	S	L	F	X	D	G	K	K	Y	D	F	P	A	I	P	S	S	.	.	.	G
Template Known Secondary structure					S																			.	.	.	.	.	.	.	.	.	.	.	.	.	S	S		S	S							G	G	G			.	.	.	.	.	.	.	.					T	T												.	.	.	S
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.	.	.																		.	.	.
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.														.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.									.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.				220
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.		.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
Predicted Secondary structure																																										.
Query SS confidence																																										.
Query Sequence		Q	P	V	G	V	G	D	V	T	S	G	L	L	L	V	K	L	L	Q	G	A	T	L	Q	E	A	L	E	H	V	T	A	A	V	Y	E	I	M	V	T	.	T	K	A	M	Q	E	Y	E	L	Q	V	V	A	A	Q	D	R	I	A	K
Query Conservation																																										.
Alig confidence																																										.
Template Conservation
Template Sequence		D	T	V	G	A	G	D	S	F	R	A	G	L	Y	L	A	L	Y	N	R	R	S	I	E	K	G	X	I	Y	G	T	I	I	A	H	H	V	I	D	D	G	I	E	N	F	S	L	N	X	E	D	L	E	R	E	T	E	N	Y	R	R
Template Known Secondary structure				T	T															T	T																						S	T	T
Template Predicted Secondary structure
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions