|   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | |
|
. | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | |
|
|
|
|
|
|
. | . | . | . | . | . | . | . | . | 70 | . |
Predicted Secondary structure |   |
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
| . | . |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
M | P | G | L | K | I | T | L | L | Q | Q | P | L | V | W | M | D | G | P | A | N | L | R | H | F | D | R | Q | L | E | G | I | . |
. |
T | G | R | D | V | I | V | L | P | E | M | F | T | S | G | F | A | M | E | A | A | A | S | S | L | A | Q | D | . |
. |
. |
. |
. |
. |
. |
D | V | V | N | W | M | T | A | K | A | Q |
Query Conservation |   |
|   |   |   |
|
|
|   |   |
|   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |
|
|   |   |
| . | . |   |
|
|
|
|
|
|
|
|
|   |   |
|   |
|
|   |   |   |   |   |   |   |   |   |   |   |   | . | . | . | . | . | . | . |   |   |   |   |   |
|   |   |   |
|   |
Alig confidence |   |
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
| . |
|
|
|
|
|   |
|   |   |   |   |   |
|
|   |   |   |
|   |   |
|
|   |   |   |
|   |   |
|   |   |   |
|
|
|
|
|
|
|
|
|
|   |
|
|
|
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|   |   |   |   |   |   |   |   |
Template Sequence |   |
L | Q | . |
L | R | L | A | L | N | Q | I | D | S | T | V | G | D | I | A | G | N | A | E | A | I | L | R | W | T | R | H | S | A | E | Q | G | A | H | L | V | A | F | P | E | M | A | L | T | G | Y | P | V | E | D | L | A | L | R | S | S | F | V | E | A | S | R | T | A | L | R | E | L | A | A | R | L | A | E | E | G |
Template Known Secondary structure |   |
B |
| . |
|  |  |  |  |  |  |
|
|
|
| T | T |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | T |
| S |  |  |  |
|
| T | T | T | T | T |
| S |
|
| G | G | G | G | G |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
Template Predicted Secondary structure |   |
|
| . |  |  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
1 | . | |
. | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . |
  |
  |   |
72 | . | . | . | . | . | . | . | 80 | . | . | . | . | |
|
|
|
|
|
|
|
|
|
. | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | |
|
. | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |
|
|  |  |  |  |  |  |
|
|
|
| . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
| . | . |
|
|  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
Q | C | N | A | L | I | A | G | S | V | A | L | Q | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
T | E | S | G | S | V | N | R | F | L | L | V | E | P | G | G | T | V | H | F | Y | D | K | R | H | L | . |
. |
F | R | M | A | D | E | H | L | H | Y | K | A | G | N | A | R | V | I | V | E | W | R | G | W | R | I | L | P | L |
Query Conservation |   |
  |   |   |
|   |
|   |   |   |   |   |   |   | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |
|   |   |   |   |
|   |   |   |
|   |
|   |   |   |   |
|   |   |
| . | . |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |
|   |   |   |   |   |   |   |
|
|   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|   |
|
|
|
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|
|
|
|   |
|
|   |   |
|   |
|   |   |   |
|   |
|   |   |
|
|   |   |   |   |
|   |
|   |   |   |
|   |   |
|   |   |   |   |
|
|   |   |   |
|   |
|
|
|
|   |
Template Sequence |   |
F | G | E | L | P | V | L | V | G | Y | L | D | R | S | E | S | A | Q | P | K | Y | G | Q | P | A | G | A | P | R | N | A | A | A | V | L | H | R | G | R | V | A | L | T | F | A | K | H | H | L | P | N | Y | G | V | F | D | E | F | R | Y | F | V | P | G | D | T | M | P | I | V | R | L | H | G | V | D | I | A | L | A |
Template Known Secondary structure |   |
| T | T | S |
|  |  |  |  |  |  |  |  |
| S | S |
| B | T | T | T | T | B |
| T | T |
|  |  |  |  |  |  |  |  |  | T | T |  |  |  |  |  |  |  |
|
|
|
|
| S | S | S | S |
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  | T | T |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |
|
|  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . |
  |
  |   |
140 | . | . | . | . | . | . | . | |
. | . | 150 | . | . | . | |
|
. | . | . | . | . | . | 160 | . | . | . | . | |
|
. | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . |
Predicted Secondary structure |   |
 |  |
|
|
|
|
|
| . |  |  |  |  |  |  | . | . |
|
|
|
|  |  |  |  |  |
|
| . | . |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |
|
|  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
| . |
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
V | C | Y | D | L | R | F | P | . |
V | W | S | R | N | L | . |
. |
N | D | Y | D | L | A | L | Y | V | A | N | . |
. |
W | P | A | P | R | S | L | H | W | Q | A | L | L | T | A | R | A | I | E | N | Q | A | Y | V | A | G | C | N | R | V | G | S | D | G | N | G | C | H | Y | R | G | D | S | R | V | I | N | P | Q | G |
Query Conservation |   |
|
|   |
|   |   |   |
| . |
|   |   |   |   |
| . | . |   |
|
|   |
|
|
|   |   |   |   | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |
|
|   |   |   |
|
|   |
|
|   |   |
|   |   |   |   |   |   |   |   |   |
|   |
|   |
|   |   |
|   |
|
Alig confidence |   |
|
|
|
|
|
|
|
| . |
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |
|
|
|   |   |   |   |   |   |   |   |
|   |   |   |
|
|
|
|
|
|   |
|
|
|
|
|   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |
|
|   |
|   |   |   |   |
|
|   |   |
|   |
|
|   |   | . |   |   |   |
|
|   |
|   |
|   |
|
|   |
|   |
|
Template Sequence |   |
I | C | E | D | L | W | Q | D | G | G | R | V | P | A | A | R | S | A | G | A | G | L | L | L | S | V | N | A | S | P | Y | E | R | D | K | D | D | T | R | L | E | L | V | R | K | R | A | Q | E | A | G | C | T | T | A | Y | L | A | M | I | G | G | Q | . |
D | E | L | V | F | D | G | D | S | I | V | V | D | R | D | G |
Template Known Secondary structure |   |
 | G | G | G | G | G | S | T | T | S |  |  |  |  |  |  | T | T | T |
| S |  |  |  |  |  |  |
|
| B |
|
|
|
| S | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | S |  |  |  |  |  |  |
|  |  |  |  | . | T | T |  |  |  |  | B |
|
|  |  |  |
| S | S | S |
Template Predicted Secondary structure |   |
 |
|  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |
|
|  |  |
|
| . |
|
|  |  |  |  |
|
|  |  |  |  |
|
|
|  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | |
. | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . |
  |
  |   |
215 | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . |
Predicted Secondary structure |   |
|  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |
|  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
E | I | I | A | T | A | D | A | H | Q | A | T | R | I | D | A | E | L | S | M |
Query Conservation |   |
  |
|
|
|   |   |   |   |   |   |   |   |
|
|   |
|   |
|
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |
|
|   |   |   |   |   |
|   |
|   |
|   |   |   |
|
|
|
|
Template Sequence |   |
E | V | V | A | R | A | P | Q | F | S | E | G | C | V | V | L | D | L | D | L |
Template Known Secondary structure |   |
|  |  |  |  |
|
| B | S | S |
|  |  |  |  |  |  |
|
| B |
Template Predicted Secondary structure |   |
 |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
239 | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . |
  |