Job Description Q47679 Confidence 100.00% Date Thu Jan 5 12:36:58 GMT 2012 Rank 5 Aligned Residues 247 % Identity 15% Template c2e2kC_ PDB info PDB header:hydrolase Chain: C: PDB Molecule:formamidase; PDBTitle: helicobacter pylori formamidase amif contains a fine-tuned cysteine-2 glutamate-lysine catalytic triad Resolution 2.50 Å

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		4	.	.	.	.	.	10	.	.	.	.	.					.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.					.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50					.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
Predicted Secondary structure														.	.	.	.																			.	.	.	.																		.	.	.	.
Query SS confidence														.	.	.	.																			.	.	.	.																		.	.	.	.
Query Sequence		L	K	I	T	L	L	Q	Q	P	L	V	W	.	.	.	.	M	D	G	P	A	N	L	R	H	F	D	R	Q	L	E	G	I	T	.	.	.	.	G	R	D	V	I	V	L	P	E	M	F	T	S	G	F	A	M	.	.	.	.	E	A	A	A	S	S	L	A	Q	D	D	V	V	N	W	M	T	A	K	A	Q
Query Conservation														.	.	.	.																			.	.	.	.																		.	.	.	.
Alig confidence														.	.	.	.																			.	.	.	.																		.	.	.	.
Template Conservation
Template Sequence		F	L	V	A	A	I	Q	F	P	V	P	I	V	N	S	R	K	D	I	D	H	N	I	E	S	I	I	R	T	L	H	A	T	K	A	G	Y	P	G	V	E	L	I	I	F	P	E	Y	S	T	Q	G	L	N	T	A	K	W	L	S	E	E	F	L	L	D	V	P	G	K	E	T	E	L	Y	A	K	A	C	K
Template Known Secondary structure																S																							T	T								T	T	T	T	T				T	T	T	T	T	S	G	G	G		B		S	S	S
Template Predicted Secondary structure
Template SS confidence
		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
		72	.	.	.	.	.	.	.	80	.	.	.	.	.				.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.		.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.		.	.	.	.	.	140	.	.	.	.	.	.
Predicted Secondary structure																.	.	.																		.																																	.
Query SS confidence																.	.	.																		.																																	.
Query Sequence		Q	C	N	A	L	I	A	G	S	V	A	L	Q	T	.	.	.	E	S	G	S	V	N	R	F	L	L	V	E	P	G	G	T	V	.	H	F	Y	D	K	R	H	L	F	R	M	A	D	E	H	L	H	Y	K	A	G	N	A	R	V	I	V	E	W	R	G	W	.	R	I	L	P	L	V	C	Y	D	L	R	F
Query Conservation																.	.	.																		.																																	.
Alig confidence																.	.	.																		.															.	.																	.
Template Conservation																																																			.	.
Template Sequence		E	A	K	V	Y	G	V	F	S	I	M	E	R	N	P	D	S	N	K	N	P	Y	N	T	A	I	I	I	D	P	Q	G	E	I	I	L	K	Y	R	K	L	F	P	W	N	P	I	E	P	.	.	W	Y	P	G	D	L	G	M	P	V	C	E	G	P	G	G	S	K	L	A	V	C	I	S	H	D	G	M	I
Template Known Secondary structure				T												S	S	T	T	S											T	T	S									S	S			T	T	T			.	.		B			S	S								G	G	G								G	G	G	G	G
Template Predicted Secondary structure																																																			.	.
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.			.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
		147	.	.	150	.			.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure							.	.
Query SS confidence							.	.
Query Sequence		P	V	W	S	R	.	.	N	L	N	D	Y	D	L	A	L	Y	V	A	N	W	P	A	P	R	S	L	H	W	Q	A	L	L	T	A	R	A	I	E	N	Q	A	Y	V	A	G	C	N	R	V	G	S	D	G	N	G	C	H	Y	R	G	D	S	R	V	I	N	P	Q	G	E	I	I	A	T	A	D	A	H	Q
Query Conservation							.	.
Alig confidence							.	.																																																.	.
Template Conservation																																																								.	.
Template Sequence		P	E	L	A	R	E	A	A	Y	K	G	C	N	V	Y	I	R	I	S	G	Y	S	T	Q	V	N	D	Q	W	I	L	T	N	R	S	N	A	W	H	N	L	M	Y	T	V	S	V	N	L	A	G	Y	D	N	.	.	F	Y	Y	F	G	E	G	Q	I	C	N	F	D	G	T	T	L	V	Q	G	H	R	N	P
Template Known Secondary structure											T	T		S										S	S	S														T	T	T									S		S			.	.												T	T	S								S		T
Template Predicted Secondary structure																																																								.	.
Template SS confidence
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.			.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	T	R	I	D	A	E	L	S	M	A	A	L	R	E	Y	R	E	K	F	P	A	W	Q	D	A	D	E	F	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		W	E	I	V	T	G	E	I	Y	P	K	M	A	D	N	A	R	L	S	W	G	L	E	N	N	I	Y	N	L	G
Template Known Secondary structure		T																					T	T						T	T
Template Predicted Secondary structure
Template SS confidence
		251	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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