Job Description Q47679 Confidence 100.00% Date Thu Jan 5 12:36:58 GMT 2012 Rank 3 Aligned Residues 254 % Identity 26% Template c1emsB_ PDB info PDB header:antitumor protein Chain: B: PDB Molecule:nit-fragile histidine triad fusion protein; PDBTitle: crystal structure of the c. elegans nitfhit protein Resolution 2.80 Å

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		1	.	.			.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.			.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.				60	.	.	.	.	.	.	.	.	.	70	.	.	.
Predicted Secondary structure					.	.																															.	.																											.	.	.
Query SS confidence					.	.																															.	.																											.	.	.
Query Sequence		M	P	G	.	.	L	K	I	T	L	L	Q	Q	P	L	V	W	M	D	G	P	A	N	L	R	H	F	D	R	Q	L	E	G	I	T	.	.	G	R	D	V	I	V	L	P	E	M	F	T	S	G	F	A	M	E	A	A	A	S	S	L	A	Q	.	.	.	D	D	V	V	N	W	M	T	A	K	A	Q	Q	C
Query Conservation					.	.																															.	.																											.	.	.
Alig confidence					.	.												.																			.	.																											.	.	.
Template Conservation																		.
Template Sequence		M	A	T	G	R	H	F	I	A	V	C	Q	M	T	S	D	.	N	D	L	E	K	N	F	Q	A	A	K	N	M	I	E	R	A	G	E	K	K	C	E	M	V	F	L	P	E	C	F	D	F	I	G	L	N	K	N	E	Q	I	D	L	A	M	A	T	D	C	E	Y	M	E	K	Y	R	E	L	A	R	K	H
Template Known Secondary structure					S									B				.	S																			T	T		S							T		S				S	S	T	T	T	T	T	T	S		B		S	S	S													T
Template Predicted Secondary structure																		.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.		.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		74	.	.	.	.	.	80	.	.	.	.	.	.					.	.	.	90	.	.	.	.	.	.	.	.	.	100		.	.	.	.	.	.	.	.	.	110	.	.	.	.								.	.	.	.	.	120	.	.	.	.	.		.	.	.	.	130	.	.	.	.	.	.	.	.	.	140
Predicted Secondary structure															.	.	.	.															.															.	.	.	.	.	.	.												.
Query SS confidence															.	.	.	.															.															.	.	.	.	.	.	.												.
Query Sequence		N	A	L	I	A	G	S	V	A	L	Q	T	E	.	.	.	.	S	G	S	V	N	R	F	L	L	V	E	P	G	G	.	T	V	H	F	Y	D	K	R	H	L	F	R	M	A	.	.	.	.	.	.	.	D	E	H	L	H	Y	K	A	G	N	A	.	R	V	I	V	E	W	R	G	W	R	I	L	P	L	V
Query Conservation															.	.	.	.															.															.	.	.	.	.	.	.												.
Alig confidence															.	.	.	.															.															.	.	.	.	.	.	.												.
Template Conservation
Template Sequence		N	I	W	L	S	L	G	G	L	H	H	K	D	P	S	D	A	A	H	P	W	N	T	H	L	I	I	D	S	D	G	V	T	R	A	E	Y	N	K	L	H	L	F	D	L	E	I	P	G	K	V	R	L	M	E	S	E	F	S	K	A	G	T	E	M	I	P	P	V	D	T	P	I	G	R	L	G	L	S	I
Template Known Secondary structure		T													S	S		T	T	S										S	S	S																	T	T	T										B				S								T	T
Template Predicted Secondary structure
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.
		141	.	.	.	.	.	.	.	.	150	.	.	.			.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure															.	.																	.
Query SS confidence															.	.																	.
Query Sequence		C	Y	D	L	R	F	P	V	W	S	R	N	L	.	.	N	D	Y	D	L	A	L	Y	V	A	N	W	P	A	P	R	.	S	L	H	W	Q	A	L	L	T	A	R	A	I	E	N	Q	A	Y	V	A	G	C	N	R	V	G	S	D	G	N	G	C	H	Y	R	G	D	S	R	V	I	N	P	Q	G	E	I	I
Query Conservation															.	.																	.
Alig confidence															.	.																	.
Template Conservation
Template Sequence		C	Y	D	V	R	F	P	E	L	S	L	W	N	R	K	R	G	A	Q	L	L	S	F	P	S	A	F	T	L	N	T	G	L	A	H	W	E	T	L	L	R	A	R	A	I	E	N	Q	C	Y	V	V	A	A	A	Q	T	G	A	H	N	P	K	R	Q	S	Y	G	H	S	M	V	V	D	P	W	G	A	V	V
Template Known Secondary structure		G	G	G	G	G											T	T		S						B			B																				T							B	B						T	T												T	T	S
Template Predicted Secondary structure
Template SS confidence
		169	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250			.	.	.	.	.	.
Predicted Secondary structure																																			.	.
Query SS confidence																																			.	.
Query Sequence		A	T	A	D	A	H	Q	A	T	R	I	D	A	E	L	S	M	A	A	L	R	E	Y	R	E	K	F	P	A	W	Q	D	A	.	.	D	E	F	R	L	W
Query Conservation																																			.	.
Alig confidence						.																													.	.
Template Conservation						.
Template Sequence		A	Q	C	S	.	E	R	V	D	M	C	F	A	E	I	D	L	S	Y	V	D	T	L	R	E	M	Q	P	V	F	S	H	R	R	S	D	L	Y	T	L	H
Template Known Secondary structure						.	S	S	S																					G	G	G	S			T	T	T
Template Predicted Secondary structure						.
Template SS confidence
		249	250	.	.		.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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