Return to main results Retrieve Phyre Job Id

Job DescriptionP77489
Confidence100.00%DateThu Jan 5 12:29:50 GMT 2012
Rank14Aligned Residues569
% Identity24%Templated1t3qb2
SCOP infoMolybdenum cofactor-binding domain Molybdenum cofactor-binding domain Molybdenum cofactor-binding domain
Resolution1.80

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   160.........170.........180.........190.........200 .........210.........220.........230.......
Predicted Secondary structure 

















..











Query SS confidence 








































. .




































Query Sequence  KNVGDFDGAFTSAAVKIDATYTTPDQSHMAMEPHASMAVWD. . GNKLTLWTSNQMIDWCRTDLAKTLKVPVENVRIISPY
Query Conservation     

   

  
  


         
  


   

  
..   
 
  


 
   
  

  



   


    
Alig confidence 








































..




































Template Conservation    


   

  
  


  
      
  


   

  
   
 
 
  


 
      

  



   


    
Template Sequence  RARDELAPIFASSAGVVRGQFSCGRVSACPMETRGAVAQYEWTTQQLILWTATQMPSFVRTMVAMFCAIPEHLIEVRVPD
Template Known Secondary structure 


SS
BB



SS

TTTT

S
T

GGG


Template Predicted Secondary structure 





























Template SS confidence 















































































   171........180.........190.........200.........210.........220.........230.........240.........250
 
   238.240.........250.........260.........270.........280.........290.........300.........310.....
Predicted Secondary structure 


































..
Query SS confidence 













































































. .
Query Sequence  IGGGFGGKLFLRSDALLAALAARAVKRPVKVMLPRPSIPNNTTHRPATLQHLRIGADQSGKITAISHESWSGNLPGGT. .
Query Conservation 





 
         


 
   




   

 
       
       
 
   

 
 
         
    ..
Alig confidence 













































































..
Template Conservation 





 
         


 
   




   

 
       
       
     

 
 
       
 


    
Template Sequence  VGGGFGQKAHLHPEELLVCLLSRALGRPVRWIEDRQENFLGATHAKQQRNEMGLAFDGDGRFLALENRSITDGGAYNNLP
Template Known Secondary structure 
S

TTTTSS

TS


S
BB


TT



SS

TT
Template Predicted Secondary structure 




































Template SS confidence 















































































   251........260.........270.........280.........290.........300.........310.........320.........330
 
   316...320.........330.........340.........350.........360.........370.........380.........
Predicted Secondary structure  ......





























Query SS confidence  . . . . . .









































































Query Sequence  . . . . . . PETAVQQSELLYAGANRHTGLRLATLDLPEGNAMRAPGEAPGLMALEIAIDELAEKAGIDPVEFRILNDTQVDP
Query Conservation  ......           
   
         

 
  

 

 
  
  

 
  

 

  

 

 
 
  
      
Alig confidence  ......









































































Template Conservation                   
 


 
     
 

  
 

 

 
  
  

 
  

 

  




 
 
  
    
 
Template Sequence  WTQLVESHVGNAVILGVYKVPAVSEESIAVATNKCPIGAYRGVGFTAGQIARETLIDRAARQLGLSPFEIRRRNVVMPED
Template Known Secondary structure  T
GGGTTTTTTB

S

SSS
B


TTTTT

TTB

GGG
Template Predicted Secondary structure 
































Template SS confidence 















































































   331........340.........350.........360.........370.........380.........390.........400.........410
 
   390.. .......400.........410.........420.........430.........440.... .....450..
Predicted Secondary structure 


....




















.............


Query SS confidence 


. . . .



















































. . . . . . . . . . . . .







Query Sequence  ADP. . . . TRCFSRRQLIECLRTGADKFGWKQRNATPGQVRDGEWLVGHGVAAGFRNNLL. . . . . . . . . . . . . EKSGARVH
Query Conservation     ....            
        
            
    
 
 
        .............    
 
 
Alig confidence 


....



















































.............







Template Conservation         
           
                      
   


 
      
 
                
 
 
Template Sequence  FPFTNRLGQTHREGTYLQTINLLEEMVNPEAFRQRQAEARARGKYLGLGVSVFNEVTGTGTRTLSFLGTPTTTHDSATVR
Template Known Secondary structure 
S
TTS

S


TTTS

TT





B
Template Predicted Secondary structure 









































Template SS confidence 















































































   411........420.........430.........440.........450.........460.........470.........480.........490
 
   453......460.........470.........480.........490.........500.........510.........520.........530
Predicted Secondary structure 

























..
Query SS confidence 













































































. .
Query Sequence  LEQNGTVTVETDMTDIGTGSYTILAQTAAEMLGVPLEQVAVHLGDSSFPVSAGSGGQWGANTSTSGVYAACMKLREMI. .
Query Conservation 
  

 
 
  
  
 


  
   

 
  


  
 
 
   

  
   

  
        

  
   
    ..
Alig confidence 













































































..
Template Conservation 
  

 
 
  
  
 


  
   

 

 



   
 
   

      

 


 
   
 

  

  
   
  
Template Sequence  IDPTGKVTVTTSLASSGQGHETTLAQIAADVLGVPASDVVIQAGSTKNTYGFGAYASRGAVIGAGSIGRAASIVRERVKQ
Template Known Secondary structure 
TTS
S


SSS
TS
GGG
SBTTS

B

S
TT
Template Predicted Secondary structure 


























Template SS confidence 















































































   491........500.........510.........520.........530.........540.........550.........560.........570
 
   531........540......... 550.........560....... ..570.........580.........590.......
Predicted Secondary structure  ..




...







........



















Query SS confidence  . .


















. . .

















. . . . . . . .





























Query Sequence  . . ASAVGFDPEQSQFADGKIT. . . NGTRSATLHEATAGGRLT. . . . . . . . AEESIEFGTLSKEYQQSTFAGHFVEVGVHS
Query Conservation  ..
             

   ...                  ........       
            
   




 
Alig confidence  ..


















...

















........





























Template Conservation   

         
    
 
             
                   
                
   




 
Template Sequence  LAGHLLEAASEDIVIEDGLVHVAGVPAKGMPFAEVVGAAYFADATHPPGFDATLEATATYDPSDLVLANGGHAAIVEIDA
Template Known Secondary structure  TS
GGGTTTT
GGG

TT







SS
T
Template Predicted Secondary structure 











































Template SS confidence 















































































   571........580.........590.........600.........610.........620.........630.........640.........650
 
   598.600.........610.........620.........630.........640.........650.........660.........670.......
Predicted Secondary structure 



































Query SS confidence 















































































Query Sequence  ATGEVRVRRMLAVCAAGRILNPKTARSQVIGAMTMGMGAALMEELAVDDRLGYFVNHDMAGYEVPVHADIPKQEVIFLDD
Query Conservation   

 
 
     
 
 
 



  
 


 

   


 

 
    
   
        

 


  
 
   
  

 
Alig confidence 

















































.




























Template Conservation   

 
 
     
 
 
 



  
 


 

   


 

 

   
  .
         
 

   


 
 
  

 
Template Sequence  STYATRVTDFFAVEDCGTMINPMIVEGQIRGGIAQAIGQTLLEEVIYDDF. GQLVTTTLMDYLIPTTLDVPDIRIRHLET
Template Known Secondary structure  TT


BS
S
T

B
B
TT.S
B


STTTS



TTT





Template Predicted Secondary structure 














.



















Template SS confidence 















































































   651........660.........670.........680.........690.........700 .........710.........720.........
 
   678.680.........690.........700.........710. ........720.........730
Predicted Secondary structure 




















...





Query SS confidence 

































. . .


















Query Sequence  TDPISSPMKAKGVGELGLCGVSAAIANAVYNATG. . . IRVRDYPITLDKLLDKLPD
Query Conservation        
 






        

 


 

 
... 
   

 


 
  

  
Alig confidence 


.





























...


















Template Conservation     .  
 






       


 


  
 
   


  

 


 
  

  
Template Sequence  PSP. LVPGGIKGMGESAMISAPAAVVAAVNDALAHLEVVIETVPITPERIFRSIQE
Template Known Secondary structure 

T.TSGGGB


TTGGGT



S

T
Template Predicted Secondary structure 


.
























Template SS confidence 























































   730.. .......740.........750.........760.........770.........780....
 
Download:Text version FASTA pairwise alignment 3D Model in PDB format

View in Jmol

Send structure to FirstGlance for more viewing options


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions