Job Description P77489 Confidence 100.00% Date Thu Jan 5 12:29:50 GMT 2012 Rank 19 Aligned Residues 301 % Identity 29% Template c3hrdF_ PDB info PDB header:oxidoreductase Chain: F: PDB Molecule:nicotinate dehydrogenase medium molybdopterin PDBTitle: crystal structure of nicotinate dehydrogenase Resolution 2.20 Å

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		429	430	.	.	.	.	.	.	.	.	.	440	.	.					.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.		500	.	.	.
Predicted Secondary structure																.	.	.	.																																																										.
Query SS confidence																.	.	.	.																																																										.
Query Sequence		W	L	V	G	H	G	V	A	A	G	F	R	N	N	.	.	.	.	L	L	E	K	S	G	A	R	V	H	L	E	Q	N	G	T	V	T	V	E	T	D	M	T	D	I	G	T	G	S	Y	T	I	L	A	Q	T	A	A	E	M	L	G	V	P	L	E	Q	V	A	V	H	L	G	D	S	S	.	F	P	V	S
Query Conservation																.	.	.	.																																																										.
Alig confidence																.	.	.	.																																																										.
Template Conservation
Template Sequence		K	K	R	G	K	G	V	G	S	M	W	Y	G	I	G	N	T	G	L	P	N	P	A	A	A	F	V	E	I	H	G	D	G	S	A	N	V	M	F	G	A	A	D	I	G	Q	G	S	G	T	A	M	A	Q	I	A	A	E	E	L	G	L	D	Y	E	K	I	H	V	T	W	G	D	T	M	V	T	P	D	G
Template Known Secondary structure																S	S	T	T	S												T	T	S											S	S	S															T			G	G	G						S		T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		504	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530					.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.				550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.	.	.																				.	.	.																			.	.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.																				.	.	.																			.	.	.	.	.	.	.	.	.
Query Sequence		A	G	S	G	G	Q	W	G	A	N	T	S	T	S	G	V	Y	A	A	C	M	K	L	R	E	M	I	.	.	.	.	A	S	A	V	G	F	D	P	E	Q	S	Q	F	A	D	G	K	I	T	.	.	.	N	G	T	R	S	A	T	L	H	E	A	T	A	G	G	R	L	T	.	.	.	.	.	.	.	.	.
Query Conservation																													.	.	.	.																				.	.	.																			.	.	.	.	.	.	.	.	.
Alig confidence																													.	.	.	.																				.	.	.																			.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	A	T	S	A	S	R	Q	T	L	I	T	G	N	A	V	I	L	A	C	R	Q	A	K	E	T	L	A	K	T	A	A	E	K	L	D	C	A	P	E	E	L	S	F	R	D	N	T	V	F	I	T	A	D	P	E	R	S	M	T	Y	G	E	L	M	A	A	M	K	A	A	G	R	M	A	V	G	A	G	S
Template Known Secondary structure				S		T	T																											T	T	S		S	S						S	T	T	B				S	S	S	S	S	S				B											T	T
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
						568	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.
Predicted Secondary structure		.	.	.	.
Query SS confidence		.	.	.	.
Query Sequence		.	.	.	.	A	E	E	S	I	E	F	G	T	L	S	K	E	Y	Q	Q	S	T	F	A	G	H	F	V	E	V	G	V	H	S	A	T	G	E	V	R	V	R	R	M	L	A	V	C	A	A	G	R	I	L	N	P	K	T	A	R	S	Q	V	I	G	A	M	T	M	G	M	G	A	A	L	M	E	E	L	A
Query Conservation		.	.	.	.
Alig confidence		.	.	.	.
Template Conservation
Template Sequence		Y	N	P	N	T	T	G	L	A	P	E	N	M	S	G	I	P	F	E	V	Y	S	Y	A	T	T	I	A	E	V	E	V	D	T	E	T	G	E	V	D	V	L	K	V	V	S	A	H	D	V	G	T	P	I	N	R	S	M	V	E	G	Q	I	E	G	G	V	T	M	G	Q	G	F	V	L	M	E	E	I	E
Template Known Secondary structure											T	T	T			S				S															T	T	T															S	S		S																						T
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		644	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	D	D	R	L	G	Y	F	V	N	H	D	M	A	G	Y	E	V	P	V	H	A	D	I	P	K	Q	E	V	I	F	L	D	D	T	D	P	I	S	S	P	M	K	A	K	G	V	G	E	L	G	L	C	G	V	S	A	A	I	A	N	A	V	Y	N	A	T	G	I	R	V	R	D	Y	P	I	T	L	D	K
Query Conservation
Alig confidence																																							.
Template Conservation																																							.
Template Sequence		V	N	T	K	N	G	A	I	K	N	P	S	M	S	K	Y	I	I	P	S	N	R	D	V	P	E	I	H	S	I	L	V	E	S	E	G	G	.	P	G	P	F	G	A	K	G	V	G	E	P	A	L	I	P	M	I	P	A	V	V	A	A	I	E	D	A	L	G	T	R	F	T	H	T	P	I	M	P	K	D
Template Known Secondary structure				T	T	T	T			S			S	T	T	T	S					T	T	T													S		.		S	G	G	G					T	T	T	T	T	T	T														T					S	S
Template Predicted Secondary structure																																							.
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.		.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		724	.	.	.	.	.	730
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	D	K	L	P	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	V	A	A	V	K	A
Template Known Secondary structure								T
Template Predicted Secondary structure
Template SS confidence
		321	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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