Job Description P77489 Confidence 100.00% Date Thu Jan 5 12:29:50 GMT 2012 Rank 18 Aligned Residues 400 % Identity 27% Template c3hrdE_ PDB info PDB header:oxidoreductase Chain: E: PDB Molecule:nicotinate dehydrogenase large molybdopterin PDBTitle: crystal structure of nicotinate dehydrogenase Resolution 2.20 Å

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		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	D	Q	L	K	V	V	G	R	P	H	D	R	I	D	G	P	L	K	T	T	G	T	A	R	Y	A	Y	E	W	H	E	E	A	P	N	A	A	Y	G	Y	I	V	G	S	A	I	A	K	G	R	L	T	A	L	D	T	D	A	A	Q	K	A	P	G	V	L	A	V	I	T	A	S	N	A	G	A	L	G	K
Query Conservation
Alig confidence																																.	.
Template Conservation																																.	.
Template Sequence		G	K	D	Y	Q	V	L	G	K	N	K	V	K	V	D	S	L	E	K	V	M	G	T	A	K	F	A	A	D	Y	.	.	S	F	P	D	M	L	Y	A	G	V	F	R	S	T	V	P	H	A	R	I	V	S	L	D	L	S	K	A	R	A	I	D	G	V	E	A	V	L	D	Y	H	A	I	P	G	K	N	R
Template Known Secondary structure						S	S	T	T	S					T	T							T				B	G	G	G		.	.			T	T										S	S	S	S	B												T	S	T	T							G	G	G		S	S
Template Predicted Secondary structure																																.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.			.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		92	.	.			.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.							160	.	.	.
Predicted Secondary structure					.	.																																																																		.	.	.	.	.	.
Query SS confidence					.	.																																																																		.	.	.	.	.	.
Query Sequence		G	D	K	.	.	N	T	A	R	L	L	G	G	P	T	I	E	H	Y	H	Q	A	I	A	L	V	V	A	E	T	F	E	Q	A	R	A	A	A	S	L	V	Q	A	H	Y	R	R	N	K	G	A	Y	S	L	A	D	E	K	Q	A	V	N	Q	P	P	E	D	T	P	D	.	.	.	.	.	.	K	N	V	G
Query Conservation					.	.																																																																		.	.	.	.	.	.
Alig confidence					.	.																																																																		.	.	.	.	.	.
Template Conservation
Template Sequence		F	G	I	I	I	K	D	E	P	C	L	V	D	D	K	V	R	R	Y	G	D	A	I	A	V	V	A	A	Q	T	P	D	L	V	Q	E	A	L	D	A	I	T	I	E	Y	E	E	L	E	G	I	F	T	M	E	R	A	L	E	E	D	S	P	A	I	H	G	D	T	N	I	H	Q	V	K	H	L	E	Y	G
Template Known Secondary structure		B		S	S	S			B		S	S		S	S		B		S	T	T									S	S										T													S						S	T	T	S			S	S	T	T		S										S
Template Predicted Secondary structure
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200		.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure																																							.
Query SS confidence																																							.
Query Sequence		D	F	D	G	A	F	T	S	A	A	V	K	I	D	A	T	Y	T	T	P	D	Q	S	H	M	A	M	E	P	H	A	S	M	A	V	W	D	.	G	N	K	L	T	L	W	T	S	N	Q	M	I	D	W	C	R	T	D	L	A	K	T	L	K	V	P	V	E	N	V	R	I	I	S	P	Y	I	G	G	G	F
Query Conservation																																							.
Alig confidence																																							.
Template Conservation
Template Sequence		D	V	D	A	A	F	K	Q	C	D	I	V	V	E	D	T	Y	S	T	H	R	L	T	H	M	F	I	E	P	D	A	G	V	S	Y	Y	D	N	E	G	M	L	T	V	V	V	S	T	Q	N	P	H	Y	D	R	G	E	V	A	G	M	L	A	L	P	N	S	K	V	R	I	I	Q	A	T	T	G	G	G	F
Template Known Secondary structure							T	T	S		S																	S	S										T	T	S									S														T			G	G	G							B					T
Template Predicted Secondary structure
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.						.	.	.	.
Predicted Secondary structure																																																																									.	.	.	.	.
Query SS confidence																																																																									.	.	.	.	.
Query Sequence		G	G	K	L	F	L	R	S	D	A	L	L	A	A	L	A	A	R	A	V	K	R	P	V	K	V	M	L	P	R	P	S	I	P	N	N	T	T	H	R	P	A	T	L	Q	H	L	R	I	G	A	D	Q	S	G	K	I	T	A	I	S	H	E	S	W	S	G	N	L	P	G	.	.	.	.	.	G	T	P	E
Query Conservation																																																																									.	.	.	.	.
Alig confidence											.																																																														.	.	.	.	.
Template Conservation											.
Template Sequence		G	G	K	L	D	L	S	V	Q	.	C	H	C	A	L	L	T	Y	H	T	K	K	P	V	K	M	V	R	S	R	E	E	S	T	T	V	S	S	K	R	H	P	M	T	M	H	C	K	T	G	A	T	K	D	G	R	L	Q	A	V	Q	V	E	M	F	G	D	T	G	A	Y	A	S	Y	G	P	A	V	I	T
Template Known Secondary structure		T	T	T	S	S		S	S		.												S															S		B														T	T																S	S		T	T
Template Predicted Secondary structure											.
Template SS confidence
		240	.	.	.	.	.	.	.	.		.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
		318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.			.
Predicted Secondary structure																																																																															.	.
Query SS confidence																																																																															.	.
Query Sequence		T	A	V	Q	Q	S	E	L	L	Y	A	G	A	N	R	H	T	G	L	R	L	A	T	L	D	L	P	E	G	N	A	M	R	A	P	G	E	A	P	G	L	M	A	L	E	I	A	I	D	E	L	A	E	K	A	G	I	D	P	V	E	F	R	I	L	N	D	T	Q	V	D	P	A	D	P	T	R	.	.	C
Query Conservation																																																																															.	.
Alig confidence																																																																															.	.
Template Conservation
Template Sequence		R	A	T	V	H	C	M	G	P	Y	V	V	P	N	V	R	V	D	A	K	F	V	Y	T	N	N	P	M	S	G	A	F	R	G	F	G	V	P	Q	A	S	V	C	H	E	G	Q	M	N	A	L	A	K	A	L	G	M	D	P	I	D	I	R	I	L	N	A	H	Q	V	G	A	K	L	A	T	G	Q	V	L
Template Known Secondary structure							S	S		S	B			S												S	S	S		B				T	T	T	T																		T	T	T			T	T							B			T	T		B		T	T	S		B
Template Predicted Secondary structure
Template SS confidence
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
		396	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.					.	.	.
Predicted Secondary structure																		.	.	.	.
Query SS confidence																		.	.	.	.
Query Sequence		F	S	R	R	Q	L	I	E	C	L	R	T	G	A	D	K	.	.	.	.	F	G	W
Query Conservation																		.	.	.	.
Alig confidence																		.	.	.	.
Template Conservation
Template Sequence		E	N	S	V	G	L	I	E	T	L	E	K	A	R	E	K	A	V	E	V	M	G	Y
Template Known Secondary structure			S
Template Predicted Secondary structure
Template SS confidence
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.