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Job DescriptionP77489
Confidence100.00%DateThu Jan 5 12:29:50 GMT 2012
Rank7Aligned Residues706
% Identity23%Templatec3eubL_
PDB info PDB header:oxidoreductaseChain: L: PDB Molecule:xanthine dehydrogenase/oxidase; PDBTitle: crystal structure of desulfo-xanthine oxidase with xanthine
Resolution2.60 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   17..20.........30.........40. ........50.........60.........70.........80.........90....
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Query Sequence  VVGRPHDRIDGPLKTTGTARYAYEW. HEEAPNAAYGYIVGSAIAKGRLTALDTDAAQKAPGVLAVITASNAGALGKGDK.
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Template Sequence  TVGRPLPHLAAAMQASGEAVYCDDIPR. . YENELFLRLVTSTRAHAKIKSIDVSEAQKVPGFVCFLSADDIPGSNETGLF
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   572.......580.........590........ .600.........610.........620.........630.........640.........
 
   95....100.........110.........120.........130.........140.........150.........160.........170....
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Query Sequence  NTARLLGGPTIEHYHQAIALVVAETFEQARAAASLVQAHYRRNKGAYSLADEKQAVNQPPEDTPDKNVGDFDGAFTSAAV
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Template Sequence  NDETVFAKDTVTCVGHIIGAVVADTPEHAERAAHVVKVTYEDLPAIITIEDAIKN. NSFYGSELKIEKGDLKKGFSEADN
Template Known Secondary structure  S
SS

S
STT
SST





ST.T
S
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   650.........660.........670.........680.........690.........700.... .....710.........720........
 
   175....180.........190.........200 .........210.........220.........230.........240.........250 .
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Query Sequence  KIDATYTTPDQSHMAMEPHASMAVWD. . GNKLTLWTSNQMIDWCRTDLAKTLKVPVENVRIISPYIGGGFGGKLFLRS. D
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Template Sequence  VVSGELYIGGQDHFYLETHCTIAIPKGEEGEMELFVSTQNAMKTQSFVAKMLGVPVNRILVRVKRMGGGFGGKETRSTLV
Template Known Secondary structure 

B



SS


SSTT


S
TS
GGG


S

TTTTTSTT
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   729730.........740.........750.........760.........770.........780.........790.........800........
 
   252.......260.........270.........280.........290.........300.........310... ......320......
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Query Sequence  ALLAALAARAVKRPVKVMLPRPSIPNNTTHRPATLQHLRIGADQSGKITAISHESWSGNLPG. . . . . GTPETAVQQSELL
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Template Sequence  SVAVALAAYKTGHPVRCMLDRNEDMLITGGRHPFLARYKVGFMKTGTIVALEVDHYSNAGNSRDLSHSIMERALFHMDNC
Template Known Secondary structure  SS


S

B


TT

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   809810.........820.........830.........840.........850.........860.........870.........880........
 
   327..330.........340.........350.........360.........370.........380.........390.... .....400.....
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Query Sequence  YAGANRHTGLRLATLDLPEGNAMRAPGEAPGLMALEIAIDELAEKAGIDPVEFRILNDTQVDPADPTR. CFSRRQLIECL
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Template Sequence  YKIPNIRGTGRLCKTNLSSNTAFRGFGGPQALFIAENWMSEVAVTCGLPAEEVRWKNMYKEGDLTHFNQRLEGFSVPRCW
Template Known Secondary structure  B

S
SS





TTTTTT

TB

TT
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   889890.........900.........910.........920.........930.........940.........950.........960........
 
   406...410.........420.........430.........440.. .......450.........460.........470........
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Query Sequence  RTGADKFGWKQRNATPGQVRDGEWLVGHGVAAGFRNN. . . . . . . LLEKSGARVHLEQNGTVTVETDMTDIGTGSYTILAQ
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Template Sequence  DECLKSSQYYARKSEVDKFNKENCWKKRGLCIIPTKFGISFTVPFLNQAGALIHVYTDGSVLVSHGGTEMGQGLHTKMVQ
Template Known Secondary structure  T
SSS
SSGGG

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   969970.........980.........990.........1000.........1010.........1020.........1030.........1040........
 
   479480.........490......... 500.........510.........520.........530 .........540.........550...
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Query Sequence  TAAEMLGVPLEQVAVHLGDSS. FPVSAGSGGQWGANTSTSGVYAACMKLREMI. . . . ASAVGFDPEQSQFADGKITNGTR
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Template Sequence  VASKALKIPISKIYISETSTNTVPNSSPTAASVSTDIYGQAVYEACQTILKRLEPFKKKNPDGSWEDWVMAAYQDRVSLS
Template Known Secondary structure  TS
GGG


TTTS
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S
TT

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   10491050.........1060.........1070.........1080.........1090.........1100.........1110.........1120........
 
   554.....560.........570.........580.........590.........600.........610.........620.........630...
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Query Sequence  SATLHEATAGGRLTAEESIEFGTLSKEYQQSTFAGHFVEVGVHSATGEVRVRRMLAVCAAGRILNPKTARSQVIGAMTMG
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Template Sequence  TTG. . . . . . FYRTPNLGYSFETNSGNAFHYFTYGVACSEVEIDCLTGDHKNLRTDIVMDVGSSLNPAIDIGQVEGAFVQG
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SS


BTTTTBS
S
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BS
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   11291130. ........1140.........1150.........1160.........1170.........1180.........1190.........1200..
 
   634.....640.........650.........660........ .670.........680.........690.........700 .........
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Query Sequence  MGAALMEELAVDDRLGYFVNHDMAGYEVPVHADIP. KQEVIFLDDTDPISSPMKAKGVGELGLCGVSA. . . AIANAVYNA
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Template Sequence  LGLFTLEELHYSPE. GSLHTRGPSTYKIPAFGSIPTEFRVSLLRDCPNKKAIYASKAVGEPPLFLGASVFFAIKDAIRAA
Template Known Secondary structure  T



B
TT.S
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STTTS



GGGS
S
SS


TTSGGGB


SSGGGGGG
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   1203......1210...... ...1220.........1230.........1240.........1250.........1260.........1270.........1280.
 
   710..... ....720.........730..
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Query Sequence  TGIRVR. . . . . . . . . DYPITLDKLLDKLPDVV
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Template Sequence  RAQHTNNNTKELFRLDSPATPEKIRNACVDKF
Template Known Secondary structure  S


TT





BS

S

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   1282.......1290.........1300.........1310...
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
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