Job Description P77489 Confidence 100.00% Date Thu Jan 5 12:29:50 GMT 2012 Rank 8 Aligned Residues 708 % Identity 26% Template c1vlbA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:aldehyde oxidoreductase; PDBTitle: structure refinement of the aldehyde oxidoreductase from2 desulfovibrio gigas at 1.28 a Resolution 1.28 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.		.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure																																										.
Query SS confidence																																										.
Query Sequence		D	K	P	A	G	E	N	P	I	D	Q	L	K	V	V	G	R	P	H	D	R	I	D	G	P	L	K	T	T	G	T	A	R	Y	A	Y	E	W	H	E	.	E	A	P	N	A	A	Y	G	Y	I	V	G	S	A	I	A	K	G	R	L	T	A	L	D	T	D	A	A	Q	K	A	P	G	V	L	A	V	I	T
Query Conservation																																										.
Alig confidence																																										.
Template Conservation
Template Sequence		E	T	D	L	E	F	K	M	P	A	D	G	R	I	W	G	S	K	Y	P	R	P	T	A	V	A	K	V	T	G	T	L	D	Y	G	A	D	L	G	L	K	M	P	A	G	T	L	H	L	A	M	V	Q	A	K	V	S	H	A	N	I	K	G	I	D	T	S	E	A	L	T	M	P	G	V	H	S	V	I	T
Template Known Secondary structure		G	G	G	G	S					S	S				T	T	S					T	T						T	T		S									T	S		T	T										S	S	S	S													T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
		83	.	.	.	.	.	.	90												.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure										.	.	.	.	.	.	.	.	.	.	.
Query SS confidence										.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	S	N	A	G	A	L	G	.	.	.	.	.	.	.	.	.	.	.	K	G	D	K	N	T	A	R	L	L	G	G	P	T	I	E	H	Y	H	Q	A	I	A	L	V	V	A	E	T	F	E	Q	A	R	A	A	A	S	L	V	Q	A	H	Y	R	R	N	K	G	A	Y	S	L	A	D	E	K	Q	A	V	N
Query Conservation										.	.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		H	K	D	V	K	G	K	N	R	I	T	G	L	I	T	F	P	T	N	K	G	D	G	W	D	R	P	I	L	C	D	E	K	V	F	Q	Y	G	D	C	I	A	L	V	C	A	D	S	E	A	N	A	R	A	A	A	E	K	V	K	V	D	L	E	E	L	P	A	Y	M	S	G	P	A	A	A	A	E	D	A
Template Known Secondary structure		G	G	G			S		S					S	S			T	T		S	S		S					S	S		S	S				S	T	T									S	S									T	T													S						S	T	T
Template Predicted Secondary structure
Template SS confidence
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.
		152	.	.	.	.	.	.	.	160	.	.									.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200		.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure													.	.	.	.	.	.	.	.																																							.
Query SS confidence													.	.	.	.	.	.	.	.																																							.
Query Sequence		Q	P	P	E	D	T	P	D	K	N	V	.	.	.	.	.	.	.	.	G	D	F	D	G	A	F	T	S	A	A	V	K	I	D	A	T	Y	T	T	P	D	Q	S	H	M	A	M	E	P	H	A	S	M	A	V	W	D	.	G	N	K	L	T	L	W	T	S	N	Q	M	I	D	W	C	R	T	D	L	A	K
Query Conservation													.	.	.	.	.	.	.	.																																							.
Alig confidence													.	.	.	.	.	.	.	.																																							.
Template Conservation
Template Sequence		I	E	I	H	P	G	T	P	N	V	Y	F	E	Q	P	I	V	K	G	E	D	T	G	P	I	F	A	S	A	D	V	T	V	E	G	D	F	Y	V	G	R	Q	P	H	M	P	I	E	P	D	V	A	F	A	Y	M	G	D	D	G	K	C	Y	I	H	S	K	S	I	G	V	H	L	H	L	Y	M	I	A	P
Template Known Secondary structure				S	S	T	T	S		S										S	S										S																	S	S										T	T	S							S		S
Template Predicted Secondary structure
Template SS confidence
		322	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	L	K	V	P	V	E	N	V	R	I	I	S	P	Y	I	G	G	G	F	G	G	K	L	F	L	R	S	D	A	L	L	A	A	L	A	A	R	A	V	K	R	P	V	K	V	M	L	P	R	P	S	I	P	N	N	T	T	H	R	P	A	T	L	Q	H	L	R	I	G	A	D	Q	S	G	K	I	T	A	I
Query Conservation
Alig confidence																																.
Template Conservation																																.
Template Sequence		G	V	G	L	E	P	D	Q	L	V	L	V	A	N	P	M	G	G	T	F	G	Y	K	F	S	P	T	S	E	A	.	L	V	A	V	A	A	M	A	T	G	R	P	V	H	L	R	Y	N	Y	Q	Q	Q	Q	Q	Y	T	G	K	R	S	P	W	E	M	N	V	K	F	A	A	K	K	D	G	T	L	L	A	M
Template Known Secondary structure				T			G	G	G									S			T	T	G	G	G	S		S	S			.										S	S														S	S		B														T	T
Template Predicted Secondary structure																																.
Template SS confidence
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.		.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
		303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.						.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.
Query SS confidence																		.	.	.	.	.
Query Sequence		S	H	E	S	W	S	G	N	L	P	G	G	T	P	E	T	.	.	.	.	.	A	V	Q	Q	S	E	L	L	Y	A	G	A	N	R	H	T	G	L	R	L	A	T	L	D	L	P	E	G	N	A	M	R	A	P	G	E	A	P	G	L	M	A	L	E	I	A	I	D	E	L	A	E	K	A	G	I	D	P	V
Query Conservation																		.	.	.	.	.
Alig confidence																		.	.	.	.	.
Template Conservation
Template Sequence		E	S	D	W	L	V	D	H	G	P	Y	S	E	F	G	D	L	L	T	L	R	G	A	Q	F	I	G	A	G	Y	N	I	P	N	I	R	G	L	G	R	T	V	A	T	N	H	V	W	G	S	A	F	R	G	Y	G	A	P	Q	S	M	F	A	S	E	C	L	M	D	M	L	A	E	K	L	G	M	D	P	L
Template Known Secondary structure										T	T			T	T												T	T	T	T	B															S	S			B				T	T	T	T																				T
Template Predicted Secondary structure
Template SS confidence
		481	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560
		378	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.		.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.				.	.	.	.	.	.	450	.	.	.
Predicted Secondary structure																			.																																																		.	.	.
Query SS confidence																			.																																																		.	.	.
Query Sequence		E	F	R	I	L	N	D	T	Q	V	D	P	A	D	P	T	R	.	C	F	S	R	R	Q	L	I	E	C	L	R	T	G	A	D	K	F	G	W	K	Q	R	N	A	T	P	G	Q	V	R	D	G	E	W	L	V	G	H	G	V	A	A	G	F	R	N	N	L	.	.	.	L	E	K	S	G	A	R	V	H	L
Query Conservation																			.																																																		.	.	.
Alig confidence																			.																										.	.																							.	.	.
Template Conservation																																													.	.
Template Sequence		E	L	R	Y	K	N	A	Y	R	P	G	D	T	N	P	T	G	Q	E	P	E	V	F	S	L	P	D	M	I	D	Q	L	R	P	K	Y	Q	A	A	L	E	K	A	.	.	Q	K	E	S	T	A	T	H	K	K	G	V	G	I	S	I	G	V	Y	G	S	G	L	D	G	P	D	A	S	E	A	W	A	E	L
Template Known Secondary structure								B			T	T				T	T	S				S																							.	.						S	S														S	S	S	T	T	T
Template Predicted Secondary structure																																													.	.
Template SS confidence
		561	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.			.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.
		454	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.				.	.	.	.	.	490	.	.	.	.	.	.	.	.	.		500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																	.	.	.																.
Query SS confidence																																	.	.	.																.
Query Sequence		E	Q	N	G	T	V	T	V	E	T	D	M	T	D	I	G	T	G	S	Y	T	I	L	A	Q	T	A	A	E	M	L	.	.	.	G	V	P	L	E	Q	V	A	V	H	L	G	D	S	S	.	F	P	V	S	A	G	S	G	G	Q	W	G	A	N	T	S	T	S	G	V	Y	A	A	C	M	K	L	R	E	M
Query Conservation																																	.	.	.																.
Alig confidence																																	.	.	.																.
Template Conservation
Template Sequence		N	A	D	G	T	I	T	V	H	T	A	W	E	D	H	G	Q	G	A	D	I	G	C	V	G	T	A	H	E	A	L	R	P	M	G	V	A	P	E	K	I	K	F	T	W	P	N	T	A	T	T	P	N	S	G	P	S	G	G	S	R	Q	Q	V	M	T	G	N	A	I	R	V	A	C	E	N	L	L	K	A
Template Known Secondary structure			T	T	S											S	S	S															G	G	G	T			G	G	G							B	T	T	T	S						S		T	T
Template Predicted Secondary structure
Template SS confidence
		639	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.
		530	.	.	.	.	.			.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.
Predicted Secondary structure								.	.
Query SS confidence								.	.
Query Sequence		I	A	S	A	V	G	.	.	F	D	P	E	Q	S	Q	F	A	D	G	K	I	T	N	G	T	R	S	A	T	L	H	E	A	T	A	G	G	R	L	T	A	E	E	S	I	E	F	G	T	L	S	K	E	Y	Q	Q	S	T	F	A	G	H	F	V	E	V	G	V	H	S	A	T	G	E	V	R	V	R	R	M
Query Conservation								.	.
Alig confidence								.	.																					.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.	.	.	.	.
Template Sequence		C	E	K	P	G	G	G	Y	Y	T	Y	D	E	L	K	A	A	D	K	P	T	K	I	T	G	N	W	T	.	.	.	.	.	.	.	.	.	A	S	G	A	T	H	C	D	A	V	T	G	L	G	K	P	F	V	V	Y	M	Y	G	V	F	M	A	E	V	T	V	D	V	A	T	G	Q	T	T	V	D	G	M
Template Known Secondary structure			B		T	T	S	S	B									T	T											.	.	.	.	.	.	.	.	.		T	T		B				T	T	T			S	B			S															T	T	T
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.	.
Template SS confidence
		719	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.										.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.
		608	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.		670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.
Predicted Secondary structure																																																																.
Query SS confidence																																																																.
Query Sequence		L	A	V	C	A	A	G	R	I	L	N	P	K	T	A	R	S	Q	V	I	G	A	M	T	M	G	M	G	A	A	L	M	E	E	L	A	V	D	D	R	L	G	Y	F	V	N	H	D	M	A	G	Y	E	V	P	V	H	A	D	I	P	K	.	Q	E	V	I	F	L	D	D	T	D	P	I	S	S	P	M	K
Query Conservation																																																																.
Alig confidence																																												.	.	.	.	.																.												.
Template Conservation																																												.	.	.	.	.																												.
Template Sequence		T	L	M	A	D	L	G	S	L	C	N	Q	L	A	T	D	G	Q	I	Y	G	G	L	A	Q	G	I	G	L	A	L	S	E	D	F	E	D	I	K	K	H	A	.	.	.	.	.	T	L	V	G	A	G	F	P	F	I	K	Q	I	P	D	K	L	D	I	V	Y	V	N	H	P	R	P	.	D	G	P	F	G
Template Known Secondary structure								S	S		S																						T					S	T	T	T	S	S	.	.	.	.	.	S	T	T	T	T	T				G	G	G	S		S												T	.	T	S	G	G	G
Template Predicted Secondary structure																																												.	.	.	.	.																												.
Template SS confidence
		790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.						.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.		.	860	.	.	.
		687	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	G	V	G	E	L	G	L	C	G	V	S	A	A	I	A	N	A	V	Y	N	A	T	G	I	R	V	R	D	Y	P	I	T	L	D	K	L	L	D	K	L	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	S	G	V	G	E	L	P	L	T	S	P	H	A	A	I	I	N	A	I	K	S	A	T	G	V	R	I	Y	R	L	P	A	Y	P	E	K	V	L	E	A	L	K
Template Known Secondary structure						T	T	G	G	G	S	S														S					B	S
Template Predicted Secondary structure
Template SS confidence
		864	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.