Job Description P77489 Confidence 100.00% Date Thu Jan 5 12:29:50 GMT 2012 Rank 2 Aligned Residues 703 % Identity 28% Template c1sb3D_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:4-hydroxybenzoyl-coa reductase alpha subunit; PDBTitle: structure of 4-hydroxybenzoyl-coa reductase from thauera2 aromatica Resolution 2.20 Å

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		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		V	V	G	R	P	H	D	R	I	D	G	P	L	K	T	T	G	T	A	R	Y	A	Y	E	W	H	E	E	A	P	N	A	A	Y	G	Y	I	V	G	S	A	I	A	K	G	R	L	T	A	L	D	T	D	A	A	Q	K	A	P	G	V	L	A	V	I	T	A	S	N	A	G	A	L	G	K	G	D	K	.	.
Query Conservation																																																																																.	.
Alig confidence																											.	.																																																				.	.
Template Conservation																											.	.
Template Sequence		T	V	G	V	R	T	P	L	V	D	G	V	E	K	V	T	G	K	A	K	Y	T	A	D	I	.	.	A	A	P	D	A	L	V	G	R	I	L	R	S	P	H	A	H	A	R	I	L	A	I	D	T	S	A	A	E	A	L	E	G	V	I	A	V	C	T	G	A	E	T	P	V	P	F	G	V	L	P	I	A
Template Known Secondary structure			T	T	S					T	T							T				B	G	G	G	S	.	.			T	T										S	S	S	S														S	T	T							G	G	G					B		S	S	T	T
Template Predicted Secondary structure																											.	.
Template SS confidence
		10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.			.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.									.	.	.	.
Predicted Secondary structure																																																																						.	.	.	.	.	.	.	.
Query SS confidence																																																																						.	.	.	.	.	.	.	.
Query Sequence		N	T	A	R	L	L	G	G	P	T	I	E	H	Y	H	Q	A	I	A	L	V	V	A	E	T	F	E	Q	A	R	A	A	A	S	L	V	Q	A	H	Y	R	R	N	K	G	A	Y	S	L	A	D	E	K	Q	A	V	N	Q	P	P	E	D	T	P	D	K	N	V	.	.	.	.	.	.	.	.	G	D	F	D
Query Conservation																																																																						.	.	.	.	.	.	.	.
Alig confidence																																																																						.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	N	E	Y	P	L	A	R	D	K	V	R	Y	R	G	D	P	V	A	A	V	A	A	I	D	E	V	T	A	E	K	A	L	A	L	I	K	V	D	Y	E	V	L	P	A	Y	M	T	P	K	A	A	M	K	A	G	A	I	A	L	H	D	D	K	P	N	N	I	L	R	E	V	H	A	E	F	G	D	V	A
Template Known Secondary structure				B		S	S		S	S				S	T	T									S	S										T													S						S	T	T				S	S	T	T		T	T	S										S
Template Predicted Secondary structure
Template SS confidence
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200			.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
Predicted Secondary structure																																				.	.
Query SS confidence																																				.	.
Query Sequence		G	A	F	T	S	A	A	V	K	I	D	A	T	Y	T	T	P	D	Q	S	H	M	A	M	E	P	H	A	S	M	A	V	W	D	.	.	G	N	K	L	T	L	W	T	S	N	Q	M	I	D	W	C	R	T	D	L	A	K	T	L	K	V	P	V	E	N	V	R	I	I	S	P	Y	I	G	G	G	F	G	G
Query Conservation																																				.	.
Alig confidence																																				.	.
Template Conservation
Template Sequence		A	A	F	A	E	A	D	L	I	R	E	K	T	Y	T	F	A	E	V	N	H	V	H	M	E	L	N	A	T	L	A	E	Y	D	P	V	R	D	M	L	T	L	N	T	T	T	Q	V	P	Y	Y	V	H	L	K	V	A	A	C	L	Q	M	D	S	A	R	I	R	V	I	K	P	F	L	G	G	G	F	G	A
Template Known Secondary structure						T		S												B					S	S										T	T	T	T							S		S														T			G	G	G							B					T	T	T
Template Predicted Secondary structure
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.						.	.	.	.	.
Predicted Secondary structure																																																																								.	.	.	.	.
Query SS confidence																																																																								.	.	.	.	.
Query Sequence		K	L	F	L	R	S	D	A	L	L	A	A	L	A	A	R	A	V	K	R	P	V	K	V	M	L	P	R	P	S	I	P	N	N	T	T	H	R	P	A	T	L	Q	H	L	R	I	G	A	D	Q	S	G	K	I	T	A	I	S	H	E	S	W	S	G	N	L	P	G	G	.	.	.	.	.	T	P	E	T	A
Query Conservation																																																																								.	.	.	.	.
Alig confidence																																																																								.	.	.	.	.
Template Conservation
Template Sequence		R	T	E	A	L	H	F	E	I	I	A	G	L	L	A	R	K	A	K	G	T	V	R	L	L	Q	T	R	E	E	T	F	I	A	H	R	G	R	P	W	T	E	V	K	M	K	I	G	L	K	K	D	G	K	I	A	A	L	A	L	E	A	T	Q	A	G	G	A	Y	A	G	Y	G	I	I	T	I	L	Y	T
Template Known Secondary structure		T	S	S																T	S																		B													T	T	S															S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		248	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390			.	.	.	.	.	.	.
Predicted Secondary structure																																																																									.	.
Query SS confidence																																																																									.	.
Query Sequence		V	Q	Q	S	E	L	L	Y	A	G	A	N	R	H	T	G	L	R	L	A	T	L	D	L	P	E	G	N	A	M	R	A	P	G	E	A	P	G	L	M	A	L	E	I	A	I	D	E	L	A	E	K	A	G	I	D	P	V	E	F	R	I	L	N	D	T	Q	V	D	P	A	.	.	D	P	T	R	C	F	S
Query Conservation																																																																									.	.
Alig confidence																																																																									.	.
Template Conservation
Template Sequence		G	A	L	M	H	G	L	Y	H	I	P	A	I	K	H	D	A	W	R	V	Y	T	N	T	P	P	C	G	A	M	R	G	H	G	T	V	D	T	R	A	A	F	E	A	L	L	T	E	M	G	E	E	L	G	I	D	S	L	K	I	R	Q	I	N	M	L	P	Q	I	P	Y	V	T	M	Y	A	Q	R	V	M
Template Known Secondary structure				T	T	S	S	S	B			S												S	S	S						S	S	T	T	T																		T	T											B		S	S	S	S				T	T
Template Predicted Secondary structure
Template SS confidence
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.
		398	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.										.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.	.	.	.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.	.	.	.	.
Query Sequence		R	R	Q	L	I	E	C	L	R	T	G	A	D	K	F	G	W	K	Q	R	N	A	T	P	G	Q	V	R	D	G	E	W	L	V	G	H	G	V	A	A	G	F	R	N	N	L	L	E	K	.	.	.	.	.	.	.	.	.	S	G	A	R	V	H	L	E	Q	N	G	T	V	T	V	E	T	D	M	T	D	I
Query Conservation																																																			.	.	.	.	.	.	.	.	.
Alig confidence																														.	.	.	.	.	.																.	.	.	.	.	.	.	.	.
Template Conservation																														.	.	.	.	.	.
Template Sequence		S	Y	G	V	P	E	C	L	E	K	V	K	A	A	S	G	W	E	E	R	K	G	K	L	P	K	G	R	.	.	.	.	.	.	G	L	G	I	A	L	S	H	F	V	S	G	T	S	T	P	K	H	W	T	G	E	P	H	A	T	V	N	L	K	L	D	F	D	G	G	I	T	L	L	T	G	A	A	D	I
Template Known Secondary structure																	T					T	T				T	T		.	.	.	.	.	.											S	S		S	S		S	S						S									T	T												S
Template Predicted Secondary structure																														.	.	.	.	.	.
Template SS confidence
		408	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.							.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.
		469	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.		500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530					.	.	.	.	.	.	.	.	.	540	.	.	.
Predicted Secondary structure																																	.																																.	.	.	.
Query SS confidence																																	.																																.	.	.	.
Query Sequence		G	T	G	S	Y	T	I	L	A	Q	T	A	A	E	M	L	G	V	P	L	E	Q	V	A	V	H	L	G	D	S	S	.	F	P	V	S	A	G	S	G	G	Q	W	G	A	N	T	S	T	S	G	V	Y	A	A	C	M	K	L	R	E	M	I	.	.	.	.	A	S	A	V	G	F	D	P	E	Q	S	Q	F
Query Conservation																																	.																																.	.	.	.
Alig confidence																																	.																																.	.	.	.
Template Conservation
Template Sequence		G	Q	G	S	N	T	M	A	S	Q	V	A	A	E	V	L	G	V	R	L	S	R	I	R	V	I	S	A	D	S	A	L	T	P	K	D	N	G	S	Y	S	S	R	V	T	F	M	V	G	N	A	S	I	S	A	A	E	E	L	K	G	V	L	V	K	A	A	A	K	K	L	D	A	R	E	E	D	I	E	V
Template Known Secondary structure		S	S															T			G	G	G						S	B	T	T	T	S						S		T	T																														T			G	G	G
Template Predicted Secondary structure
Template SS confidence
		482	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.
		544	.	.	.	.	.				550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.																	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.
Predicted Secondary structure								.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence								.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	D	G	K	I	T	.	.	.	N	G	T	R	S	A	T	L	H	E	A	T	A	G	G	R	L	T	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	E	S	I	E	F	G	T	L	S	K	E	Y	Q	Q	S	T	F	A	G	H	F	V	E	V	G	V	H	S	A	T	G	E	V	R	V
Query Conservation								.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence								.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		I	D	E	M	F	M	V	S	G	S	Q	D	P	G	L	S	F	Q	E	V	V	K	A	A	M	V	D	S	G	T	I	T	V	K	G	T	Y	T	C	P	T	E	F	Q	G	D	K	K	I	R	G	S	A	I	G	A	T	M	G	F	C	Y	A	A	Q	V	V	E	A	S	V	D	E	I	T	G	K	V	T	A
Template Known Secondary structure			T	T					T	T		S	S														T	T	T		S											G	G	G	S			T	T	S	T	T	T	T	T	T			S															T	T	T
Template Predicted Secondary structure
Template SS confidence
		562	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.
		605	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	R	M	L	A	V	C	A	A	G	R	I	L	N	P	K	T	A	R	S	Q	V	I	G	A	M	T	M	G	M	G	A	A	L	M	E	E	L	A	V	D	D	R	L	G	Y	F	V	N	H	D	M	A	G	Y	E	V	P	V	H	A	D	I	P	K	Q	E	V	I	F	L	D	D	T	D	P	I	S	S	P
Query Conservation
Alig confidence																																												.	.																																	.
Template Conservation																																												.	.																																	.
Template Sequence		H	K	V	W	V	A	V	D	V	G	K	A	L	N	P	L	A	V	E	G	Q	T	Q	G	G	V	W	M	G	M	G	Q	A	L	S	E	E	T	V	Y	D	N	.	.	G	R	M	V	H	G	N	I	L	D	Y	R	V	P	T	I	V	E	S	P	D	I	E	V	I	I	V	E	S	M	D	P	.	N	G	P
Template Known Secondary structure											S	S		S	S																					T							T	.	.	T			S			S	T	T	T	S					T	T	T														T	.	T	S	G
Template Predicted Secondary structure																																												.	.																																	.
Template SS confidence
		642	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.			.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.		.	.	.
		685	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730
Predicted Secondary structure
Query SS confidence
Query Sequence		M	K	A	K	G	V	G	E	L	G	L	C	G	V	S	A	A	I	A	N	A	V	Y	N	A	T	G	I	R	V	R	D	Y	P	I	T	L	D	K	L	L	D	K	L	P	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	G	A	K	E	A	S	E	G	M	L	A	G	F	L	P	A	I	H	E	A	V	Y	E	A	V	G	V	R	A	T	D	F	P	L	S	P	D	R	I	T	E	L	L	D	A
Template Known Secondary structure		G	G					S	S	T	T	S	T	T														S							S
Template Predicted Secondary structure
Template SS confidence
		719	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.