Job Description P77489 Confidence 100.00% Date Thu Jan 5 12:29:50 GMT 2012 Rank 4 Aligned Residues 714 % Identity 22% Template c1n62E_ PDB info PDB header:oxidoreductase Chain: E: PDB Molecule:carbon monoxide dehydrogenase large chain; PDBTitle: crystal structure of the mo,cu-co dehydrogenase (codh), n-2 butylisocyanide-bound state Resolution 1.09 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		13	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
Predicted Secondary structure																																																																																.	.
Query SS confidence																																																																																.	.
Query Sequence		D	Q	L	K	V	V	G	R	P	H	D	R	I	D	G	P	L	K	T	T	G	T	A	R	Y	A	Y	E	W	H	E	E	A	P	N	A	A	Y	G	Y	I	V	G	S	A	I	A	K	G	R	L	T	A	L	D	T	D	A	A	Q	K	A	P	G	V	L	A	V	I	T	A	S	N	A	G	A	L	G	.	.
Query Conservation																																																																																.	.
Alig confidence																															.	.																																																.	.
Template Conservation																															.	.
Template Sequence		E	K	L	Q	G	M	G	C	K	R	K	R	V	E	D	I	R	F	T	Q	G	K	G	N	Y	V	D	D	V	.	.	K	L	P	G	M	L	F	G	D	F	V	R	S	S	H	A	H	A	R	I	K	S	I	D	T	S	K	A	K	A	L	P	G	V	F	A	V	L	T	A	A	D	L	K	P	L	N	L	H
Template Known Secondary structure							T	T						T						T	T	T				B	G	G	G		.	.			T	T										S		S	S														S	T	T											G	G	G	T		S
Template Predicted Secondary structure																															.	.
Template SS confidence
		16	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.			.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
					91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
Predicted Secondary structure		.	.	.																																																																								.	.	.	.	.	.
Query SS confidence		.	.	.																																																																								.	.	.	.	.	.
Query Sequence		.	.	.	K	G	D	K	N	T	A	R	L	L	G	G	P	T	I	E	H	Y	H	Q	A	I	A	L	V	V	A	E	T	F	E	Q	A	R	A	A	A	S	L	V	Q	A	H	Y	R	R	N	K	G	A	Y	S	L	A	D	E	K	Q	A	V	N	Q	P	P	E	D	T	P	D	K	N	.	.	.	.	.	.
Query Conservation		.	.	.																																																																								.	.	.	.	.	.
Alig confidence		.	.	.																																																																								.	.	.	.	.	.
Template Conservation
Template Sequence		Y	M	P	T	L	A	G	D	V	Q	A	V	L	A	D	E	K	V	L	F	Q	N	Q	E	V	A	F	V	V	A	K	D	R	Y	V	A	A	D	A	I	E	L	V	E	V	D	Y	E	P	L	P	V	L	V	D	P	F	K	A	M	E	P	D	A	P	L	L	R	E	D	I	K	D	K	M	T	G	A	H	G
Template Known Secondary structure						T	T	S					S	S		S	S				S	T	T									S	S																								G	G	G	T	T	S	T	T						T	T	T	T	T					T	T
Template Predicted Secondary structure
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
																	162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200			.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	G	D	F	D	G	A	F	T	S	A	A	V	K	I	D	A	T	Y	T	T	P	D	Q	S	H	M	A	M	E	P	H	A	S	M	A	V	W	D	.	.	G	N	K	L	T	L	W	T	S	N	Q	M	I	D	W	C	R	T	D	L	A	K	T	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																								.	.
Template Conservation
Template Sequence		A	R	K	H	H	N	H	I	F	R	W	E	I	G	D	K	E	G	T	D	A	T	F	A	K	A	E	V	V	S	K	D	M	F	T	Y	H	R	V	H	P	S	P	L	E	T	C	Q	C	V	A	S	M	D	K	I	K	G	E	L	T	L	W	G	T	F	Q	A	P	H	V	I	R	T	V	V	S	L	I	S
Template Known Secondary structure				S	S	T	T																					S												B					S	S										T	T	T	T									S	S
Template Predicted Secondary structure
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	V	P	V	E	N	V	R	I	I	S	P	Y	I	G	G	G	F	G	G	K	L	F	L	R	S	D	A	L	L	A	A	L	A	A	R	A	V	K	R	P	V	K	V	M	L	P	R	P	S	I	P	N	N	T	T	H	R	P	A	T	L	Q	H	L	R	I	G	A	D	Q	S	G	K	I	T	A	I	S	H
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	L	P	E	H	K	I	H	V	I	A	P	D	I	G	G	G	F	G	N	K	V	G	A	Y	S	G	Y	V	C	A	V	V	A	S	I	V	L	G	V	P	V	K	W	V	E	D	R	M	E	N	L	S	T	T	S	F	A	R	D	Y	H	M	T	T	E	L	A	A	T	K	D	G	K	I	L	A	M	R	C
Template Known Secondary structure					G	G	G							B		S			T	T	T	T	S	S																S	S															S																T	T
Template Predicted Secondary structure
Template SS confidence
		254	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
		305	.	.	.	.	310	.	.	.	.								.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.		.	.	350		.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.																																		.				.
Query SS confidence												.	.	.	.	.	.	.																																		.				.
Query Sequence		E	S	W	S	G	N	L	P	G	G	.	.	.	.	.	.	.	T	P	E	T	A	V	Q	Q	S	E	L	L	Y	A	G	A	N	R	H	T	G	L	R	L	A	T	L	D	L	P	E	G	N	.	A	M	R	.	A	P	G	E	A	P	G	L	M	A	L	E	I	A	I	D	E	L	A	E	K	A	G	I	D
Query Conservation												.	.	.	.	.	.	.																																		.				.
Alig confidence												.	.	.	.	.	.	.																																		.				.
Template Conservation
Template Sequence		H	V	L	A	D	H	G	A	F	D	A	C	A	D	P	S	K	W	P	A	G	F	M	N	I	C	T	G	S	Y	D	M	P	V	A	H	L	A	V	D	G	V	Y	T	N	K	A	S	G	G	V	A	Y	R	C	S	F	R	V	T	E	A	V	Y	A	I	E	R	A	I	E	T	L	A	Q	R	L	E	M	D
Template Known Secondary structure									S	S							T	T		T	T	T	T	G	G	G	T	T	T	T	B			S												S	S					S		S	S		T	T	T																				T
Template Predicted Secondary structure
Template SS confidence
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.
		376	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.					.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.							.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.
Predicted Secondary structure																						.	.	.	.																															.	.	.	.	.	.																				.
Query SS confidence																						.	.	.	.																															.	.	.	.	.	.																				.
Query Sequence		P	V	E	F	R	I	L	N	D	T	Q	V	D	P	A	D	P	T	R	C	.	.	.	.	F	S	R	R	Q	L	I	E	C	L	R	T	G	A	D	K	F	G	W	K	Q	R	N	A	T	P	G	Q	V	R	.	.	.	.	.	.	D	G	E	W	L	V	G	H	G	V	A	A	G	F	R	N	N	L	L	.
Query Conservation																						.	.	.	.																															.	.	.	.	.	.																				.
Alig confidence																						.	.	.	.																															.	.	.	.	.	.																				.
Template Conservation
Template Sequence		S	A	D	L	R	I	K	N	F	I	Q	P	E	Q	F	P	Y	M	A	P	L	G	W	E	Y	D	S	G	N	Y	P	L	A	M	K	K	A	M	D	T	V	G	Y	H	Q	L	R	A	E	Q	K	A	K	Q	E	A	F	K	R	G	E	T	R	E	I	M	G	I	G	I	S	F	F	T	E	I	V	G	A	G
Template Known Secondary structure										B			G	G	G		S				T	T	S																				T																	T	T	S		S														B	S
Template Predicted Secondary structure
Template SS confidence
		414	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.
													445	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.		500	.	.	.	.	.	.	.	.	.	510	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																																																								.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.																																																								.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	E	K	S	G	A	R	V	H	L	E	Q	N	G	T	V	T	V	E	T	D	M	T	D	I	G	T	G	S	Y	T	I	L	A	Q	T	A	A	E	M	L	G	V	P	L	E	Q	V	A	V	H	L	G	D	S	S	.	F	P	V	S	A	G	S	G	G	Q	W	G	A
Query Conservation		.	.	.	.	.	.	.	.	.	.	.																																																								.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																																																								.
Template Conservation
Template Sequence		P	S	K	N	C	D	I	L	G	V	S	M	F	D	S	A	E	I	R	I	H	P	T	G	S	V	I	A	R	M	G	T	K	S	Q	G	Q	G	H	E	T	T	Y	A	Q	I	I	A	T	E	L	G	I	P	A	D	D	I	M	I	E	E	G	N	T	D	T	A	P	Y	G	L	G	T	Y	G	S	R	S	T
Template Known Secondary structure			T	T	T				T	T													T	T	S							S				S	S	S															T			G	G	G							B	T	T	T	S						S		T	T		T	T
Template Predicted Secondary structure
Template SS confidence
		494	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.
		513	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530					.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.				550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.						.	.	.	.	.	.	580
Predicted Secondary structure																				.	.	.	.																				.	.	.																									.	.	.	.	.
Query SS confidence																				.	.	.	.																				.	.	.																									.	.	.	.	.
Query Sequence		N	T	S	T	S	G	V	Y	A	A	C	M	K	L	R	E	M	I	.	.	.	.	A	S	A	V	G	F	D	P	E	Q	S	Q	F	A	D	G	K	I	T	.	.	.	N	G	T	R	S	A	T	L	H	E	A	T	A	G	G	R	L	T	A	E	E	S	I	E	.	.	.	.	.	F	G	T	L	S	K	E
Query Conservation																				.	.	.	.																				.	.	.																									.	.	.	.	.
Alig confidence																				.	.	.	.																				.	.	.																									.	.	.	.	.
Template Conservation
Template Sequence		P	T	A	G	A	A	T	A	V	A	A	R	K	I	K	A	K	A	Q	M	I	A	A	H	M	L	E	V	H	E	G	D	L	E	W	D	V	D	R	F	R	V	K	G	L	P	E	K	F	K	T	M	K	E	L	A	W	A	S	Y	N	S	P	P	P	N	L	E	P	G	L	E	A	V	N	Y	Y	D	P	P
Template Known Secondary structure		T	T																									T	S		G	G	G					S	S					T	T																		S			T	T	S		S	S										S
Template Predicted Secondary structure
Template SS confidence
		574	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.
		581	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	Q	Q	S	T	F	A	G	H	F	V	E	V	G	V	H	S	A	T	G	E	V	R	V	R	R	M	L	A	V	C	A	A	G	R	I	L	N	P	K	T	A	R	S	Q	V	I	G	A	M	T	M	G	M	G	A	A	L	M	E	E	L	A	V	D	D	R	L	G	Y	F	V	N	H	D	M	A	G	Y	E
Query Conservation
Alig confidence																																																																					.
Template Conservation																																																																					.
Template Sequence		N	M	T	Y	P	F	G	A	Y	F	C	I	M	D	I	D	V	D	T	G	V	A	K	T	R	R	F	Y	A	L	D	D	C	G	T	R	I	N	P	M	I	I	E	G	Q	V	H	G	G	L	T	E	A	F	A	V	A	M	G	Q	E	I	R	Y	D	E	Q	.	G	N	V	L	G	A	S	F	M	D	F	F
Template Known Secondary structure		S		B														T	T	T															B	S		S																						T							T	T	.					S		S	T	T	T	S
Template Predicted Secondary structure																																																																					.
Template SS confidence
		654	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720		.	.	.	.	.	.	.	.	.	730	.	.
		661	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710				.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730
Predicted Secondary structure																																																				.	.	.
Query SS confidence																																																				.	.	.
Query Sequence		V	P	V	H	A	D	I	P	K	Q	E	V	I	F	L	D	D	T	D	P	I	S	S	P	M	K	A	K	G	V	G	E	L	G	L	C	G	V	S	A	A	I	A	N	A	V	Y	N	A	T	.	.	.	G	I	R	V	R	D	Y	P	I	T	L	D	K	L	L	D	K	L	P	D
Query Conservation																																																				.	.	.
Alig confidence																						.																														.	.	.
Template Conservation																						.
Template Sequence		L	P	T	A	V	E	T	P	K	W	E	T	D	Y	T	V	T	P	S	P	.	H	H	P	I	G	A	K	G	V	G	E	S	P	H	V	G	G	V	P	C	F	S	N	A	V	N	D	A	Y	A	F	L	N	A	G	H	I	Q	M	P	H	D	A	W	R	L	W	K	V	G	E	Q
Template Known Secondary structure					T	T	T	S													T	.	T	S	T	T		B				T	T																				T	T	T						S
Template Predicted Secondary structure																						.
Template SS confidence
		733	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.		.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.