Job Description P37348 Confidence 100.00% Date Thu Jan 5 11:55:24 GMT 2012 Rank 1 Aligned Residues 231 % Identity 23% Template d1vpqa_ SCOP info TIM beta/alpha-barrel TM1631-like TM1631-like Resolution 2.20

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20								.	.	.	.	.	.	.	.			.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.
Predicted Secondary structure																						.	.	.	.	.	.	.									.	.
Query SS confidence																						.	.	.	.	.	.	.									.	.
Query Sequence		M	I	Y	I	G	L	P	Q	W	S	H	P	K	W	V	R	L	G	I	T	.	.	.	.	.	.	.	S	L	E	E	Y	A	R	H	.	.	F	N	C	V	E	G	N	T	T	L	Y	A	L	P	K	P	E	V	V	L	R	W	R	E	Q	T	T	D	D	F	R	F	C	F	K	F	P	A	T	I	S	H	Q
Query Conservation																						.	.	.	.	.	.	.									.	.
Alig confidence																						.	.	.	.	.	.	.									.	.
Template Conservation
Template Sequence		M	V	Y	V	G	T	S	G	F	S	F	E	D	W	K	G	V	V	Y	P	E	H	L	K	P	S	Q	F	L	K	Y	Y	W	A	V	L	G	F	R	I	V	E	L	N	F	T	Y	Y	T	Q	P	S	W	R	S	F	V	Q	M	L	R	K	T	P	P	D	F	Y	F	T	V	K	T	P	G	S	V	T	H	V
Template Known Secondary structure								B		S			S	T	T	B	T	T	T	B		T	T			G	G	G								T	S											S	S	S	S	S										T	T	S		T	T														T
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
				72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.			.	.	.	.	.	.	100	.	.	.	.	.	.	.	.			.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
Predicted Secondary structure		.	.																							.	.																.	.
Query SS confidence		.	.																							.	.																.	.
Query Sequence		.	.	A	A	L	R	H	C	D	D	L	V	T	E	F	L	T	R	M	S	P	L	A	P	.	.	R	I	G	Q	Y	W	L	Q	L	P	A	T	F	G	P	.	.	R	E	L	P	A	L	W	H	F	L	D	S	L	P	G	E	F	N	Y	G	V	E	V	R	H	P	Q	F	F	A	K	G	E	E	E	Q	T
Query Conservation		.	.																							.	.																.	.
Alig confidence		.	.																							.	.																.	.															.	.																.	.	.	.	.
Template Conservation																																																											.	.																.	.	.	.	.
Template Sequence		L	W	K	E	G	K	D	P	K	E	D	M	E	N	F	T	R	Q	I	E	P	L	I	E	E	Q	R	L	K	M	T	L	A	Q	F	P	F	S	F	K	F	S	R	K	N	V	E	Y	L	E	K	L	R	E	S	Y	P	.	.	Y	E	L	A	V	E	F	R	H	Y	S	W	D	R	E	.	.	.	.	.	E
Template Known Secondary structure						T			S																	T	T											T	T																				.	.	S								B	G	G	G		S		.	.	.	.	.
Template Predicted Secondary structure																																																											.	.																.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.			.	.	140	.	.	.	.	.	.	.	.	.	150	.	.						.
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.													.	.	.	.	.	210	.	.	.
Predicted Secondary structure																																																													.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																													.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	N	R	G	L	H	Q	R	G	V	N	R	V	I	L	D	S	R	P	V	H	A	A	R	P	H	S	E	A	I	R	D	A	Q	R	K	K	P	K	V	P	V	H	A	V	L	T	A	T	N	P	L	I	R	F	I	G	S	D	.	.	.	.	.	.	.	.	.	.	.	.	D	M	T	Q	N	R	E	L	F
Query Conservation																																																													.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	Y	E	F	L	R	N	H	G	I	T	F	V	V	V	D	E	P	K	L	P	G	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	P	Y	R	P	I	T	T	T	D	Y	A	Y	F	R	F	H	G	R	N	E	R	W	F	E	A	E	G	E	E	R	Y	D	Y	L	Y	S	E	E	E	L
Template Known Secondary structure										T												T	T	B	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								S	S	S											T	T	T	T	T			G	G	G	T	T
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.																	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
		214	.	.	.	.	.	220	.	.	.		.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure												.
Query SS confidence												.
Query Sequence		Q	V	W	L	Q	K	L	A	Q	W	.	H	Q	T	T	T	P	Y	L	F	L	H	T	P	D	I	A	Q	A	P	E	L	V	H	T	L	W	E	D	L	R	K
Query Conservation												.
Alig confidence												.
Template Conservation
Template Sequence		K	T	L	F	E	D	V	V	E	L	S	R	R	V	K	E	T	Y	V	F	F	N	N	C	Y	K	G	Q	A	A	I	N	A	L	Q	F	K	K	M	L	E	E
Template Known Secondary structure													T	T	S	S										G	G	G
Template Predicted Secondary structure
Template SS confidence
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions