Job Description P0AA39 Confidence 100.00% Date Thu Jan 5 11:11:50 GMT 2012 Rank 8 Aligned Residues 203 % Identity 19% Template c3dh3C_ PDB info PDB header:isomerase/rna Chain: C: PDB Molecule:ribosomal large subunit pseudouridine synthase f; PDBTitle: crystal structure of rluf in complex with a 22 nucleotide2 rna substrate Resolution 3.00 Å

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		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	A	G	Q	R	I	D	N	F	L	R	T	Q	L	K	G	V	P	K	S	M	I	Y	R	I	L	R	K	G	E	V	R	V	N	K	K	R	I	K	P	E	Y	K	L	E	A	G	D	E	V	R	I	P	P	V	R	V	A	E	R	E	E	E	A	V	S	P	H	L	Q	K	V	A	A	L	A	D	V	I	L
Query Conservation
Alig confidence																.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	S	S	V	R	L	N	K	Y	I	S	E	S	G	.	I	C	S	R	R	E	A	D	R	Y	I	E	Q	G	N	V	F	L	N	G	K	R	A	T	I	G	D	Q	V	K	P	G	D	V	V	K	V	N	G	Q	L	I	E	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	E
Template Known Secondary structure													T	T	T	.	S	S											T	T					T	T					T	T					T	T						T	T						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																.																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.		.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.																				.	.
		97	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	E	D	D	H	I	L	V	L	N	K	P	S	G	T	A	V	H	G	G	S	G	L	S	F	G	V	I	E	G	L	R	A	L	R	P	E	A	R	F	L	E	L	V	H	R	L	D	R	D	T	S	G	V	L	L	V	A	K	K	R	S	A	L	R	S	L	H	E	Q	L	R	E	K	G	M	Q	K	D	Y
Query Conservation
Alig confidence																																	.	.	.	.																																	.	.
Template Conservation																																	.	.	.	.																																	.	.
Template Sequence		A	E	D	L	V	L	I	A	L	N	K	P	V	G	I	V	S	T	T	E	D	G	E	R	D	N	I	V	D	F	V	.	.	.	.	N	H	S	K	R	V	F	P	I	G	R	L	D	K	D	S	Q	G	L	I	F	L	T	N	H	G	D	L	V	N	K	I	.	.	L	R	A	G	N	D	H	E	K	E	Y
Template Known Secondary structure		G	G	G										T	T		B					S	S		T	T	B						.	.	.	.	T		S	S					S	S				T	T									S		T							.	.			G	G	G
Template Predicted Secondary structure																																	.	.	.	.																																	.	.
Template SS confidence
		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.					.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.			.	.	.	130	.	.	.	.	.	.	.
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	A	L	V	R	G	Q	W	Q	S	H	V	K	S	V	Q	A	P	L	L	K	N	I	L	Q	S	G	E	R	I	V	R	V	S	Q	E	G	K	P	S	E	T	R	F	K	V	E	E	R	Y	A	F	A	T	L	V	R	C	S	P	V	T	G	R	T	H	Q	I	R	V	H	T	Q	Y	A	G	H	P	I	A
Query Conservation
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.
Template Sequence		L	V	T	V	D	K	P	I	T	E	E	F	.	.	.	.	.	.	.	.	.	.	.	.	.	I	R	G	M	S	A	G	V	P	I	L	G	T	V	T	K	K	C	K	V	.	.	.	K	K	E	A	P	F	V	F	R	I	T	L	V	Q	G	L	N	R	Q	I	R	R	M	C	E	H	F	G	Y	E	V	K
Template Known Secondary structure						S	S							.	.	.	.	.	.	.	.	.	.	.	.	.						T			B		S	S	S	B							.	.	.				S	S	S							S				T	T									T	T
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.
Template SS confidence
		138	.	140	.	.	.	.	.	.	.	.	.														150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.				170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
		257	.	.	260	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	D	D	R	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	L	E	R	T
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		202	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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