Job Description P0AA39 Confidence 98.93% Date Thu Jan 5 11:11:50 GMT 2012 Rank 17 Aligned Residues 95 % Identity 19% Template c3bbnD_ PDB info PDB header:ribosome Chain: D: PDB Molecule:ribosomal protein s4; PDBTitle: homology model for the spinach chloroplast 30s subunit2 fitted to 9.4a cryo-em map of the 70s chlororibosome. Resolution 9.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.		.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure																																						.
Query SS confidence																																						.
Query Sequence		Q	R	I	D	N	F	L	R	T	Q	L	K	G	V	P	K	S	M	I	Y	R	I	L	R	K	G	E	V	R	V	N	K	K	R	I	K	.	P	E	Y	K	L	E	A	G	D	E	V	R	I	P	P	V	R	V	A	E	R	E	E	E	A	V	S	P	H	L	Q	K	V	A	A	L	A	D	V	I	L	Y	E
Query Conservation																																						.
Alig confidence																																						.															.	.	.	.	.	.	.	.	.
Template Conservation																																																					.	.	.	.	.	.	.	.	.
Template Sequence		M	R	L	D	N	I	L	F	R	L	G	M	A	P	T	I	P	G	A	R	Q	L	V	N	H	R	H	I	L	V	N	G	R	I	V	D	I	P	S	Y	R	C	K	P	Q	D	T	I	M	A	R	.	.	.	.	.	.	.	.	.	D	E	Q	K	S	I	A	L	I	Q	N	S	L	D	L	S	P	R	E	E
Template Known Secondary structure		S	B	T	T	T	T	T	T	T	T	T	S	S	S	S	S									T	T					T	T						T	T		B			T	T							.	.	.	.	.	.	.	.	.	S	S	T	T	S								S	S	S	T	T	T	S
Template Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.										140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		99	100	.	.	.	.	.	.			.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
Predicted Secondary structure										.	.
Query SS confidence										.	.
Query Sequence		D	D	H	I	L	V	L	N	.	.	K	P	S	G	T	A	V	H	G	G	S	G	L	S	F	G	V
Query Conservation										.	.
Alig confidence										.	.
Template Conservation
Template Sequence		L	P	K	H	L	T	L	N	P	F	P	Y	K	G	L	V	N	Q	I	I	D	S	K	W	V	G	L
Template Known Secondary structure				T	T					T	T	T	T						S				G	G	G
Template Predicted Secondary structure
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions