Job Description P0AA39 Confidence 94.95% Date Thu Jan 5 11:11:50 GMT 2012 Rank 43 Aligned Residues 73 % Identity 25% Template c2xzmW_ PDB info PDB header:ribosome Chain: W: PDB Molecule:40s ribosomal protein s4; PDBTitle: crystal structure of the eukaryotic 40s ribosomal2 subunit in complex with initiation factor 1. this file3 contains the 40s subunit and initiation factor for4 molecule 1 Resolution 3.93 Å

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		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.		.	.	.	.	.	40	.	.			.	.	.	.	.	.	.	50	.	.	.	.	.		.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure																				.									.	.														.
Query SS confidence																				.									.	.														.
Query Sequence		E	A	G	Q	R	I	D	N	F	L	R	T	Q	L	K	G	V	P	.	K	S	M	I	Y	R	I	L	.	.	R	K	G	E	V	R	V	N	K	K	R	I	K	.	P	E	Y	K	L	E	A	G	D	E	V	R	I	P	P	V	R	V	A	E	R	E	E	E	A	V	S	P	H	L	Q	K	V	A	A	L	A
Query Conservation																				.									.	.														.
Alig confidence																				.									.	.														.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	E	S	L	P	L	S	V	L	L	K	E	R	L	N	Y	A	L	N	G	R	D	V	T	L	I	L	N	D	K	E	Q	N	V	F	V	D	G	K	V	R	R	D	K	G	Y	P	T	G	L	M	D	V	V	R	I	E	K	T	D	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S
Template Known Secondary structure		S	S									T	T	T	T		S			S								T	T	S	T	T						T	T						T	T					T	T						G	G	G	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.																			100
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	V	I	L	Y	E	D	D	H	I	L	V	L	N	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	R	I	L	Y	D	T	K	G	R	F	V	L	K	S
Template Known Secondary structure								S	S	S
Template Predicted Secondary structure
Template SS confidence
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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