Job Description P0AA39 Confidence 100.00% Date Thu Jan 5 11:11:50 GMT 2012 Rank 5 Aligned Residues 214 % Identity 38% Template c2i82D_ PDB info PDB header:lyase/rna Chain: D: PDB Molecule:ribosomal large subunit pseudouridine synthase a; PDBTitle: crystal structure of pseudouridine synthase rlua: indirect2 sequence readout through protein-induced rna structure Resolution 2.05 Å

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		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	H	L	Q	K	V	A	A	L	A	D	V	I	L	Y	E	D	D	H	I	L	V	L	N	K	P	S	G	T	A	V	H	G	G	S	G	L	S	F	G	V	I	E	G	L	R	A	L	R	P	E	A	R	F	L	E	L	V	H	R	L	D	R	D	T	S	G	V	L	L	V	A	K	K	R	S	A	L	R	S
Query Conservation
Alig confidence																																																.
Template Conservation																																																.
Template Sequence		E	N	Y	N	P	P	Q	E	P	W	L	V	I	L	Y	Q	D	D	H	I	X	V	V	N	K	P	S	G	L	L	S	V	P	G	R	L	E	E	H	K	D	S	V	X	T	R	.	I	Q	R	D	Y	P	Q	A	E	S	V	H	R	L	D	X	A	T	S	G	V	I	V	V	A	L	T	K	A	A	E	R	E
Template Known Secondary structure								S	S	S									S	S								T	T	S	B	S	S			S	S	G	G	G			B					.		T	T	T	S	T	T				S	S				S	S									S	S
Template Predicted Secondary structure																																																.
Template SS confidence
		904	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.		950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.		.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure																																																																			.
Query SS confidence																																																																			.
Query Sequence		L	H	E	Q	L	R	E	K	G	M	Q	K	D	Y	L	A	L	V	R	G	Q	W	Q	S	H	V	K	S	V	Q	A	P	L	L	K	N	I	L	Q	S	G	E	R	I	V	R	V	S	Q	E	G	K	P	S	E	T	R	F	K	V	E	E	R	Y	A	.	F	A	T	L	V	R	C	S	P	V	T	G	R	T
Query Conservation																																																																			.
Alig confidence																																																	.																		.
Template Conservation																																																	.
Template Sequence		L	K	R	Q	F	R	E	R	E	P	K	K	Q	Y	V	A	R	V	W	G	H	P	S	P	A	E	G	L	V	D	L	P	L	I	C	D	W	P	N	R	P	K	Q	K	V	C	Y	.	E	T	G	K	P	A	Q	T	E	Y	E	V	V	E	Y	A	A	D	N	T	A	R	V	V	L	K	P	I	T	G	R	S
Template Known Secondary structure								T	T		S										S			S	S	S												G	G	G	T	T						T	.	T	T		B													T	T	T									S	S			T
Template Predicted Secondary structure																																																	.
Template SS confidence
		983	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.		1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.
		242	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	Q	I	R	V	H	T	Q	Y	A	G	H	P	I	A	F	D	D	R	Y	G	D	R	E	F	D	R	Q	L	T	E	A	G	T	G	L	N	R	L	F	L	H	A	A	A	L	K	F	T	H	P	G	T	G	E	V	M	R	I	E	A	P	M	D
Query Conservation
Alig confidence																												.	.	.	.	.	.	.
Template Conservation																												.	.	.	.	.	.	.
Template Sequence		H	Q	L	R	V	H	X	L	A	L	G	H	P	I	L	G	D	R	F	Y	A	S	P	E	A	R	.	.	.	.	.	.	.	A	X	A	P	R	L	L	L	H	A	E	X	L	T	I	T	H	P	A	Y	G	N	S	X	T	F	K	A	P	A	D
Template Known Secondary structure		T										T			B	T	T		T	T	T	S						.	.	.	.	.	.	.	T	T		S	S													T	T	T
Template Predicted Secondary structure																												.	.	.	.	.	.	.
Template SS confidence
		1062	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.								.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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