Job Description P0AA39 Confidence 100.00% Date Thu Jan 5 11:11:50 GMT 2012 Rank 7 Aligned Residues 202 % Identity 21% Template c1vioA_ PDB info PDB header:lyase Chain: A: PDB Molecule:ribosomal small subunit pseudouridine synthase a; PDBTitle: crystal structure of pseudouridylate synthase Resolution 1.59 Å

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		20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.		.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure																																						.
Query SS confidence																																						.
Query Sequence		Q	R	I	D	N	F	L	R	T	Q	L	K	G	V	P	K	S	M	I	Y	R	I	L	R	K	G	E	V	R	V	N	K	K	R	I	K	.	P	E	Y	K	L	E	A	G	D	E	V	R	I	P	P	V	R	V	A	E	R	E	E	E	A	V	S	P	H	L	Q	K	V	A	A	L	A	D	V	I	L	Y	E
Query Conservation																																						.
Alig confidence													.																									.																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	R	L	D	K	F	I	A	E	N	V	.	G	L	T	R	S	Q	A	T	K	A	I	R	Q	S	A	V	K	I	N	G	E	I	V	K	S	G	S	V	Q	I	S	Q	E	D	E	I	Y	F	E	D	E	L	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	W	I	E
Template Known Secondary structure													.	T												T	T					T	T						T	T					T	T	S					T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		S	S
Template Predicted Secondary structure													.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.		.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.																						.	.	.	.
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	D	H	I	L	V	L	N	K	P	S	G	T	A	V	H	G	G	S	G	L	S	F	G	V	I	E	G	L	R	A	L	R	P	E	A	R	F	L	E	L	V	H	R	L	D	R	D	T	S	G	V	L	L	V	A	K	K	R	S	A	L	R	S	L	H	E	Q	L	R	E	K	G	M	Q	K	D	Y	L	A
Query Conservation
Alig confidence																					.	.														.	.																														.	.
Template Conservation																					.	.														.	.																														.	.
Template Sequence		E	G	Q	Y	F	M	L	N	K	P	Q	G	C	V	C	S	N	D	D	.	.	Y	P	T	I	Y	Q	F	F	D	Y	P	L	A	.	.	G	K	L	H	S	A	G	R	L	D	V	D	T	T	G	L	V	L	L	T	D	D	G	Q	W	S	H	R	I	.	.	T	S	P	K	H	H	C	E	K	T	Y	L	V
Template Known Secondary structure												T	T		B	S	S				.	.			B	G	G	G	G	S		T	T	G	G	.	.	G	G				S	S				T	T									S									.	.			T	T	S
Template Predicted Secondary structure																					.	.														.	.																														.	.
Template SS confidence
		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.			.	.	80	.	.	.	.	.	.	.	.	.	90			.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.			120	.	.	.	.	.	.	.	.	.	130	.	.
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	R	G	Q	W	Q	S	H	V	K	S	V	Q	A	P	L	L	K	N	I	L	Q	S	G	E	R	I	V	R	V	S	Q	E	G	K	P	S	E	T	R	F	K	V	E	E	R	Y	A	F	A	T	L	V	R	C	S	P	V	T	G	R	T	H	Q	I	R	V	H	T	Q	Y	A	G	H	P	I	A	F	D
Query Conservation
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Template Sequence		T	L	A	D	P	V	E	E	N	Y	S	A	.	.	.	.	.	.	.	.	.	.	.	.	.	A	C	A	E	G	I	L	L	R	G	E	K	E	P	T	K	P	A	K	L	E	I	L	D	D	.	Y	N	V	N	L	T	I	S	E	G	R	Y	H	Q	V	K	R	M	F	A	A	L	G	N	K	V	V	G	L
Template Known Secondary structure				S	S				T	T				.	.	.	.	.	.	.	.	.	.	.	.	.									T	T		S	S											S	S	.	S							S				T	T									T	T
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Template SS confidence
		135	.	.	.	.	140	.	.	.	.	.	.														.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.		.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
		259			260	.	.	.
Predicted Secondary structure			.	.
Query SS confidence			.	.
Query Sequence		D	.	.	R	Y	G	D
Query Conservation			.	.
Alig confidence			.	.
Template Conservation
Template Sequence		H	R	W	K	I	G	D
Template Known Secondary structure							T	T
Template Predicted Secondary structure
Template SS confidence
		201	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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