Job Description P0AA39 Confidence 100.00% Date Thu Jan 5 11:11:50 GMT 2012 Rank 4 Aligned Residues 227 % Identity 31% Template c1qyuA_ PDB info PDB header:lyase Chain: A: PDB Molecule:ribosomal large subunit pseudouridine synthase d; PDBTitle: structure of the catalytic domain of 23s rrna pseudouridine2 synthase rlud Resolution 2.00 Å

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		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.					.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure																																																.	.	.	.
Query SS confidence																																																.	.	.	.
Query Sequence		K	V	A	A	L	A	D	V	I	L	Y	E	D	D	H	I	L	V	L	N	K	P	S	G	T	A	V	H	G	G	S	G	L	S	F	G	V	I	E	G	L	R	A	L	R	P	.	.	.	.	E	A	R	F	L	E	L	V	H	R	L	D	R	D	T	S	G	V	L	L	V	A	K	K	R	S	A	L	R	S
Query Conservation																																																.	.	.	.
Alig confidence																																																.	.	.	.
Template Conservation
Template Sequence		E	P	Q	D	I	P	L	D	I	V	Y	E	D	E	D	I	I	I	I	N	K	P	R	D	L	V	V	H	P	G	A	G	N	P	D	G	T	V	L	N	A	L	L	H	Y	Y	P	P	I	A	D	V	P	R	A	G	I	V	H	R	L	D	K	D	T	T	G	L	X	V	V	A	K	T	V	P	A	Q	T	R
Template Known Secondary structure															S	S								S	S			S	S		B	T	T	B	S	S	S	S										G	G	G	G	G	S	G	G	G	G	B		S				T	T									S	S
Template Predicted Secondary structure
Template SS confidence
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	H	E	Q	L	R	E	K	G	M	Q	K	D	Y	L	A	L	V	R	G	Q	W	Q	S	H	V	K	S	V	Q	A	P	L	L	K	N	I	L	Q	S	G	E	R	I	V	R	V	S	Q	E	G	K	P	S	E	T	R	F	K	V	E	E	R	Y	A	F	A	T	L	V	R	C	S	P	V	T	G	R	T	H
Query Conservation
Alig confidence																									.																					.	.
Template Conservation																									.																					.	.
Template Sequence		L	V	E	S	L	Q	R	R	E	I	T	R	E	Y	E	A	V	A	I	G	H	X	T	.	A	G	G	T	V	D	E	P	I	S	R	H	P	T	K	R	T	H	X	A	.	.	V	H	P	M	G	K	P	A	V	T	H	Y	R	I	X	E	H	F	R	V	H	T	R	L	R	L	R	L	E	T	G	R	T	H
Template Known Secondary structure								T	T												S				.													S	S		T	T				.	.			T	T	S	B													S	S									S				T	T
Template Predicted Secondary structure																									.																					.	.
Template SS confidence
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200			.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
		243	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270						.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.
Query SS confidence																														.	.	.	.	.
Query Sequence		Q	I	R	V	H	T	Q	Y	A	G	H	P	I	A	F	D	D	R	Y	G	D	R	E	F	D	R	Q	L	.	.	.	.	.	T	E	A	G	T	G	L	N	R	L	F	L	H	A	A	A	L	K	F	T	H	P	G	T	G	E	V	M	R	I	E	A	P	M	D	E	G	L	K	R	C	L	Q	K	L	R
Query Conservation																														.	.	.	.	.
Alig confidence																														.	.	.	.	.
Template Conservation
Template Sequence		Q	I	R	V	H	X	A	H	I	T	H	P	L	V	G	D	P	V	Y	G	G	R	P	R	P	P	K	G	A	S	E	A	F	I	S	T	L	R	K	F	D	R	Q	A	L	H	A	T	X	L	R	L	Y	H	P	I	S	G	I	E	X	E	W	H	A	P	I	P	Q	D	X	V	E	L	I	E	V	X	R
Template Known Secondary structure										T	T			B	T	T		T	T	T	T							T	T														S													T	T	T
Template Predicted Secondary structure
Template SS confidence
		235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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