 |
Job Description | P0AGE6 | Confidence | 91.85% | Date | Thu Jan 5 11:28:54 GMT 2012 |
Rank | 72 | Aligned Residues | 122 |
% Identity | 13% | Template | c3lwzC_ |
PDB info |
PDB header:lyase | Chain: C: PDB Molecule:3-dehydroquinate dehydratase; |
PDBTitle: 1.65 angstrom resolution crystal structure of type ii 3-2 dehydroquinate dehydratase (aroq) from yersinia pestis
|
Resolution | 1.65 Å |
|
 |
  |   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
. | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
M | S | E | K | L | Q | V | V | T | L | L | G | S | L | R | K | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
G | S | F | N | G | M | V | A | R | T | L | P | K | I | A | P | A | S | M | E | V | N | A | L | P | S | I | A | D | I | P | L | Y | D | A | D | V | Q | Q | E | E | G | F | P | A | T | V | E | A | L | A | E | Q |
Query Conservation |   |
|   |   |   |
|
|
|
|   |
|   |
|
|   |
|   | . | . | . | . | . | . | . | . | . | . | . |   |
|   |
|   |   |
|   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |   |   |   |
|
|
|
|
|
|
|
|
|
|   |
|
|   |
|
|
|   |
|
|
|   |   |
|
|   |   |
|   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |   | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|   |
|
|
|
|
|
|   |
|   |   |
|
Template Sequence |   |
M | S | D | K | F | H | I | L | L | L | N | G | P | N | L | N | L | L | G | T | R | E | P | E | K | Y | G | Y | T | T | L | A | E | I | V | S | Q | L | E | I | Q | A | Q | G | M | D | V | A | L | S | H | L | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
Q | S | N | A | E | H | A | L | I | D | S | I | H | Q | A |
Template Known Secondary structure |   |
|
| S | S |
|  |  |  |  |  |  |
| T | T | G | G | G | T | T |
| S | S |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . |  |
| S |
|  |  |  |  |  |  |  |  |  |  | T |
Template Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . |
  |
  |   |
70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
|
|
. | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |
|
|  |  |  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . | . | . | . | . | . | . | . |  |  |  |
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
I | R | Q | A | D | G | V | V | I | V | T | P | E | Y | N | Y | S | V | P | G | G | L | K | N | A | I | D | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
W | L | S | R | L | P | D | Q | P | L | A | G | K | P | V | L | I | Q | T | S | S | M | G | V | I | G | G | A | R | C | Q | Y | H | L | R | Q | I | L | V |
Query Conservation |   |
|   |   |
|
|   |
|
|   |   |
|
|   |
|   |   |   |   |   |   |   |
|
|   |   |
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |
|   |
|   |   |
|   |   |   |   |   |   |   |
|   |   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |
|   |
|
|
|
|
|
|
|   |
|
|
|
|
|
|
|   |
|
|
|   |   |   |   |   |
|   |
|
|
|
|
|
|
|
|   |
|
|
|   |
|
|
|   |
|   |
|
|   |   |
|   |
|   |
|   |
|   |
|   |   |
|
|   |
|
|
|   |
|
|   |   |   |
|   |
Template Sequence |   |
R | G | N | T | D | F | I | L | I | N | P | A | A | F | T | H | T | S | V | A | L | R | D | A | L | L | G | V | Q | I | P | F | I | E | I | H | L | S | N | V | H | A | R | E | P | F | R | H | H | S | Y | L | S | D | I | A | V | G | V | I | C | G | L | G | A | D | G | Y | N | F | A | L | Q | A | A | V | N | R | L | S |
Template Known Secondary structure |   |
T | T | T |
| S |  |  |  |  |  |
| G | G | G | G | G | T |
|  |  |  |  |  |  |  |  |  |  | T |
|
|  |  |  |  |  | S | S |
| G | G | G | S |
| G | G | G | G |
|
| S | S | T | T | T | S | S |  |  |  |  | S | S | T | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |
|
|
|
|  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |
|
|
|
|
|
|
|
|  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
68 | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|