Job Description P0AGE6 Confidence 98.75% Date Thu Jan 5 11:28:54 GMT 2012 Rank 56 Aligned Residues 161 % Identity 18% Template c2wc1A_ PDB info PDB header:electron transport Chain: A: PDB Molecule:flavodoxin; PDBTitle: three-dimensional structure of the nitrogen fixation2 flavodoxin (niff) from rhodobacter capsulatus at 2.2 a Resolution 2.17 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	S	E	K	L	Q	V	V	T	L	L	G	S	L	R	K	G	S	F	N	G	M	V	A	R	T	L	P	K	I	A	P	A	S	M	E	V	N	A	L	P	S	I	A	D	I	P	L	Y	D	A	D	V	Q	Q	E	E	G	F	P	A	T	V	E	A	L	A	E	Q	I	R	Q	A	D	G	V	V	I	V	T
Query Conservation
Alig confidence					.	.	.								.	.																			.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.								.	.																			.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	A	K	.	.	.	I	G	L	F	F	G	S	.	.	D	T	G	T	T	R	K	I	A	K	Q	I	K	D	M	F	D	D	.	E	V	M	A	K	P	L	N	V	N	R	A	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	A	D	F	M	A	Y	D	F	L	I	L	G	T
Template Known Secondary structure				S	.	.	.								.	.	S	S	S											T	T	S		T	.	T	T	B						G	G	G			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								S
Template Predicted Secondary structure					.	.	.								.	.																			.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1	.	.				.	.	.	.	.	.	10			.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.		.	30	.	.	.	.	.	.	.	.	.	40	.																				.	.	.	.	.	.	.	.	50	.	.	.	.	.
		81	.	.		.	.	.	.	.	.	90	.	.						.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.				.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure					.										.	.	.	.	.																										.	.	.
Query SS confidence					.										.	.	.	.	.																										.	.	.
Query Sequence		P	E	Y	.	N	Y	S	V	P	G	G	L	K	.	.	.	.	.	N	A	I	D	W	L	S	R	L	P	D	Q	P	L	A	G	K	P	V	L	I	Q	T	S	S	.	.	.	M	G	V	I	G	G	A	R	C	Q	Y	H	L	R	Q	I	L	V	F	L	D	A	M	V	M	N	K	P	E	F	M	G	G	V
Query Conservation					.										.	.	.	.	.																										.	.	.
Alig confidence					.										.	.	.	.	.																										.	.	.
Template Conservation
Template Sequence		P	T	L	G	D	G	Q	L	P	G	L	S	A	N	A	A	S	E	S	W	E	E	F	L	P	R	I	A	D	Q	D	F	S	G	K	T	I	A	L	F	G	L	G	D	Q	V	T	Y	P	L	E	F	V	N	A	L	F	F	L	H	E	F	F	S	D	R	G	A	N	V	V	G	R	W	P	A	K	G	Y	G
Template Known Secondary structure				B	T	T	T	B		S	S	G	G	G	T		S	S							G	G	G	G	T	T				T	T											T	T	T		T	T	S	T	T	T											T	T	T										T	T	S
Template Predicted Secondary structure
Template SS confidence
		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.
		152	.	.	.	.	.	.	.	160	.										.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.	.	.	.
Query Sequence		I	Q	N	K	V	D	P	Q	T	G	.	.	.	.	.	.	.	.	.	E	V	I	D	Q	G	T	L	D	H	L	T	G	Q	L	T	A	F	G	E	F	I	Q	R	V
Query Conservation												.	.	.	.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	E	D	S	L	A	V	V	E	G	E	F	L	G	L	A	L	D	Q	D	N	Q	A	A	L	T	P	E	R	L	K	G	W	L	S	L	I	A	A	D	F	G	L	V
Template Known Secondary structure			S			T	T			T	T			S	S					T	T	T		G	G	G												T					T
Template Predicted Secondary structure
Template SS confidence
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions