Job Description P32717 Confidence 99.31% Date Thu Jan 5 11:50:40 GMT 2012 Rank 52 Aligned Residues 181 % Identity 19% Template c3zq4C_ PDB info PDB header:hydrolase Chain: C: PDB Molecule:ribonuclease j 1; PDBTitle: unusual, dual endo- and exo-nuclease activity in the degradosome2 explained by crystal structure analysis of rnase j1 Resolution 3.00 Å

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		135	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.									160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.	.
Query Sequence		N	I	T	F	V	E	G	E	K	G	I	I	V	I	D	P	L	V	T	P	P	A	A	K	A	.	.	.	.	.	.	.	.	A	L	D	L	Y	F	Q	H	R	P	Q	K	P	I	V	A	V	I	Y	T	H	S	H	T	D	H	Y	G	G	V	K	G	I	I	S	E	A	D	V	K	S	G	K	V	Q	V	I
Query Conservation																											.	.	.	.	.	.	.	.
Alig confidence																											.	.	.	.	.	.	.	.								.	.																										.	.	.	.	.
Template Conservation																																										.	.																										.	.	.	.	.
Template Sequence		N	T	Y	A	V	Q	F	Q	D	E	I	V	L	I	D	A	G	I	K	F	P	E	D	E	L	L	G	I	D	Y	V	I	P	D	Y	T	Y	L	V	K	.	.	N	E	D	K	I	K	G	L	F	I	T	H	G	H	E	D	H	I	G	G	I	P	Y	L	L	.	.	.	.	.	R	Q	V	N	I	P	V	Y
Template Known Secondary structure									T	T										B				T	T	S	T	T		S											T	.	.	T	G	G	G							S								T	T						.	.	.	.	.	T	T
Template Predicted Secondary structure																																										.	.																										.	.	.	.	.
Template SS confidence
		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.			.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.						.	.	90	.	.	.	.	.
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	P	A	G	F	M	D	E	A	I	S	E	N	V	L	A	G	N	I	M	S	R	R	A	L	Y	S	Y	G	L	L	L	P	H	N	A	Q	G	N	V	G	N	G	L	G	V	T	L	A	T	G	D	P	S	I	I	A	P	T	K	T	I	V	R	T	G	E	K	M	I	I	D	G	L	E	F	D	F	L	M
Query Conservation
Alig confidence																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	G	K	L	A	I	G	L	L	R	N	K	L	E	E	H	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	L	R	Q	T	K	L	N	I	I	G	E	D	D	I	V	K	F	R	K	T	A	V	S	F	F	R
Template Known Secondary structure																		S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T	T	S							T	T						T	T
Template Predicted Secondary structure																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.																																					.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.
		287	.	.	290	.	.	.	.	.	.	.	.	.	300			.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.						.	.	.	.	.	.	.
Predicted Secondary structure																.	.																																																					.	.	.	.	.
Query SS confidence																.	.																																																					.	.	.	.	.
Query Sequence		T	P	G	S	E	A	P	A	E	M	H	F	Y	I	.	.	P	A	L	K	A	L	C	T	A	E	N	A	T	H	T	L	H	N	F	Y	T	L	R	G	A	K	T	R	D	T	S	K	W	T	E	Y	L	N	E	T	L	D	M	W	G	N	D	A	E	V	L	F	.	.	.	.	.	M	P	H	T	W	P	V
Query Conservation																.	.																																																					.	.	.	.	.
Alig confidence					.											.	.																			.	.	.	.	.				.													.	.	.	.	.	.	.							.	.	.	.	.
Template Conservation					.																															.	.	.	.	.				.													.	.	.	.	.	.	.
Template Sequence		T	T	H	.	S	I	P	D	S	Y	G	I	V	V	K	T	P	P	G	N	I	V	H	T	G	D	F	K	F	D	F	T	P	V	.	.	.	.	.	G	E	P	.	A	N	L	T	K	M	A	E	I	G	K	E	.	.	.	.	.	.	.	G	V	L	C	L	L	S	D	S	T	N	S	E	N	P	E	F	T
Template Known Secondary structure			B		.	S	S	S	S									T	T								S		B			S	S		S	.	.	.	.	.	S	S		.												T	.	.	.	.	.	.	.										T	T	T	T			S
Template Predicted Secondary structure					.																															.	.	.	.	.				.													.	.	.	.	.	.	.
Template SS confidence
		140	.	.		.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.						.	.	.		.	.	.	.	180	.	.	.	.	.	.	.								.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
		360	.	.	.	.	.	.	.	.	.	370	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	G	N	K	H	I	N	D	Y	I	G	K	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	S	E	R	R	V	G	E	S	I	H	D	I
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		206	.	.	.	210	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions