Job Description P32717 Confidence 100.00% Date Thu Jan 5 11:50:40 GMT 2012 Rank 4 Aligned Residues 225 % Identity 17% Template c3spuB_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:beta-lactamase ndm-1; PDBTitle: apo ndm-1 crystal structure Resolution 2.10 Å

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		102	.	.	.	.	.	.	.	110	.	.	.		.	.	.	.				.	.	120	.	.	.	.	.	.	.	.	.	130	.	.									.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
Predicted Secondary structure														.					.	.	.																.	.	.	.	.	.	.	.
Query SS confidence														.					.	.	.																.	.	.	.	.	.	.	.
Query Sequence		V	N	P	S	L	W	R	Q	S	Q	I	N	.	G	I	S	G	.	.	.	L	F	K	V	T	D	K	M	Y	Q	V	R	G	Q	D	.	.	.	.	.	.	.	.	I	S	N	I	T	F	V	E	G	E	K	G	I	I	V	I	D	P	L	V	T	P	P	A	A	K	A	A	L	D	L	Y	F	Q	H	R	P
Query Conservation														.					.	.	.																.	.	.	.	.	.	.	.
Alig confidence														.					.	.	.																.	.	.	.	.	.	.	.																																			.
Template Conservation																																																																															.
Template Sequence		I	R	P	T	I	G	Q	Q	M	E	T	G	D	Q	R	F	G	D	L	V	F	R	Q	L	A	P	N	V	W	Q	H	T	S	Y	L	D	M	P	G	F	G	A	V	A	S	N	G	L	I	V	R	D	G	G	R	V	L	V	V	D	T	A	W	T	D	D	Q	T	A	Q	I	L	N	W	I	K	Q	.	E	I
Template Known Secondary structure												T	T					T	T								T	T											T	T	T													T	T									S	S														.		T
Template Predicted Secondary structure																																																																															.
Template SS confidence
		31	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.		.	.
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	K	P	I	V	A	V	I	Y	T	H	S	H	T	D	H	Y	G	G	V	K	G	I	I	S	E	A	D	V	K	S	G	K	V	Q	V	I	A	P	A	G	F	M	D	E	A	I	S	E	N	V	L	A	G	N	I	M	S	R	R	A	L	Y	S	Y	G	L	L	L	P	H	N	A	Q	G	N	V	G	N	G
Query Conservation
Alig confidence																									.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	L	P	V	A	L	A	V	V	T	H	A	H	Q	D	K	M	G	G	M	D	A	L	.	.	.	.	.	.	H	A	A	G	I	A	T	Y	A	N	A	L	S	N	Q	L	A	P	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure												S	S	S					T	T					.	.	.	.	.	.			T	T													G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																									.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.							.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
		250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	G	V	T	L	A	T	G	D	P	S	I	I	A	P	T	K	T	I	V	R	T	G	E	K	M	I	I	D	G	L	E	F	D	F	L	M	T	P	G	S	E	A	P	A	E	M	H	F	Y	I	P	A	L	K	A	L	C	T	A	E	N	A	T	H	T	L	H	N	F	Y	T	L	R	G	A	K	T	R	D
Query Conservation
Alig confidence		.	.																																.							.																												.	.
Template Conservation		.	.																																.							.																												.	.
Template Sequence		.	.	E	G	M	V	A	A	Q	H	S	L	T	F	A	A	N	G	W	V	E	P	A	T	A	P	N	F	G	P	L	K	V	.	F	Y	P	G	P	G	.	H	T	S	D	N	I	T	V	G	I	D	G	T	D	I	A	F	G	G	C	L	I	K	D	S	K	A	.	.	K	S	L	G	N	L	G	D	A	D
Template Known Secondary structure		.	.	G	T					S					B		T	T	S	B	B		G	G	G	S	T	T		T	T				.					S	S	.	S	S	S	S							T	T	S	S					T	T	T				T	T		.	.	S						T	T
Template Predicted Secondary structure		.	.																																.							.																												.	.
Template SS confidence
				152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.		.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.			.	.	.	.	220	.	.	.	.	.
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	S	K	W	T	E	Y	L	N	E	T	L	D	M	W	G	N	D	A	E	V	L	F	M	P	H	T	W	P	V	W	G	N	K	H	I	N	D	Y	I	G	K	Y	R	D	T	I	K
Query Conservation
Alig confidence																			.														.	.	.	.	.
Template Conservation																			.														.	.	.	.	.
Template Sequence		T	E	H	Y	A	A	S	A	R	A	F	G	A	A	F	P	K	.	A	S	M	I	V	M	S	H	S	A	P	D	S	.	.	.	.	.	R	A	A	I	T	H	T	A	R	M	A	D
Template Known Secondary structure		T	T	T												S	T	T	.							T	T						.	.	.	.	.	T
Template Predicted Secondary structure																			.														.	.	.	.	.
Template SS confidence
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.		.	.	.	.	.	.	.	250	.	.	.	.	.						.	.	.	.	260	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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