Job Description P32717 Confidence 99.96% Date Thu Jan 5 11:50:40 GMT 2012 Rank 17 Aligned Residues 211 % Identity 17% Template c3rkjA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:beta-lactamase ndm-1; PDBTitle: crystal structure of new delhi metallo-beta-lactamase-1 from2 klebsiella pnueumoniae Resolution 2.00 Å

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		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.									.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.
Query Sequence		L	F	K	V	T	D	K	M	Y	Q	V	R	G	Q	D	I	.	.	.	.	.	.	.	.	S	N	I	T	F	V	E	G	E	K	G	I	I	V	I	D	P	L	V	T	P	P	A	A	K	A	A	L	D	L	Y	F	Q	H	R	P	Q	K	P	I	V	A	V	I	Y	T	H	S	H	T	D	H	Y	G	G	V
Query Conservation																		.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.																																		.
Template Conservation																																																											.
Template Sequence		F	R	Q	L	A	P	N	V	W	Q	H	T	S	Y	L	D	M	P	G	F	G	A	V	A	S	N	G	L	I	V	R	D	G	G	R	V	L	V	V	D	T	A	W	T	D	D	Q	T	A	Q	I	L	N	W	I	K	Q	.	E	I	N	L	P	V	A	L	A	V	V	T	H	A	H	Q	D	K	M	G	G	M
Template Known Secondary structure							T	T											T	T	S													T	T									S	S														.		T										S	S	S	S					T	T
Template Predicted Secondary structure																																																											.
Template SS confidence
		51	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.		.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	G	I	I	S	E	A	D	V	K	S	G	K	V	Q	V	I	A	P	A	G	F	M	D	E	A	I	S	E	N	V	L	A	G	N	I	M	S	R	R	A	L	Y	S	Y	G	L	L	L	P	H	N	A	Q	G	N	V	G	N	G	L	G	V	T	L	A	T	G	D	P	S	I	I	A	P	T	K	T	I	V
Query Conservation
Alig confidence					.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	A	L	.	.	.	.	.	.	H	A	A	G	I	A	T	Y	A	N	A	L	S	N	Q	L	A	P	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	G	M	V	A	A	Q	H	S	L	T	F	A	A	N	G	W	V
Template Known Secondary structure					.	.	.	.	.	.			T	T													G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	T					S					B		T	T	S	B	B
Template Predicted Secondary structure					.	.	.	.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		130	.	.							.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.																																			.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	T	G	E	K	M	I	I	D	G	L	E	F	D	F	L	M	T	P	G	S	E	A	P	A	E	M	H	F	Y	I	P	A	L	K	A	L	C	T	A	E	N	A	T	H	T	L	H	N	F	Y	T	L	R	G	A	K	T	R	D	T	S	K	W	T	E	Y	L	N	E	T	L	D	M	W	G	N	D	A	E
Query Conservation
Alig confidence															.							.																												.	.																												.
Template Conservation															.							.																												.	.																												.
Template Sequence		E	P	A	T	A	P	N	F	G	P	L	K	V	.	F	Y	P	G	P	G	.	H	T	S	D	N	I	T	V	G	I	D	G	T	D	I	A	F	G	G	C	L	I	K	D	S	K	A	.	.	K	S	L	G	N	L	G	D	A	D	T	E	H	Y	A	A	S	A	R	A	F	G	A	A	F	P	K	.	A	S
Template Known Secondary structure			T	T	T	S	T	T		T	T				.					S	S	.	S	S	S	S							T	T	T	T						T	S				T	T		.	.	S	S					T	T			T	T	T												S	T	T	.
Template Predicted Secondary structure															.							.																												.	.																												.
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.		.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.			.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.		.	.
		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	L	F	M	P	H	T	W	P	V	W	G	N	K	H	I	N	D	Y	I	G	K	Y	R	D	T	I	K	Y	I
Query Conservation
Alig confidence													.	.	.	.	.
Template Conservation													.	.	.	.	.
Template Sequence		M	I	V	M	S	H	S	A	P	D	S	.	.	.	.	.	R	A	A	I	T	H	T	A	R	M	A	D	K	L
Template Known Secondary structure						S	S	S			B		.	.	.	.	.	T												T	T
Template Predicted Secondary structure													.	.	.	.	.
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.						.	.	.	.	260	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions