Job Description P32717 Confidence 98.94% Date Thu Jan 5 11:50:40 GMT 2012 Rank 64 Aligned Residues 163 % Identity 17% Template c3af5A_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:putative uncharacterized protein ph1404; PDBTitle: the crystal structure of an archaeal cpsf subunit, ph1404 from2 pyrococcus horikoshii Resolution 2.60 Å

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		124	.	.	.	.	.	130	.	.	.			.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.					.	.	.	.	.	.	.	160					.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.
Predicted Secondary structure												.	.																				.	.	.	.									.	.	.	.
Query SS confidence												.	.																				.	.	.	.									.	.	.	.
Query Sequence		K	M	Y	Q	V	R	G	Q	D	I	.	.	S	N	I	T	F	V	E	G	E	K	G	I	I	V	I	D	P	L	V	.	.	.	.	T	P	P	A	A	K	A	A	.	.	.	.	L	D	L	Y	F	Q	H	R	P	Q	K	P	I	V	A	V	I	Y	T	H	S	H	T	D	H	Y	G	G	V	K	G	I	I
Query Conservation												.	.																				.	.	.	.									.	.	.	.
Alig confidence												.	.																				.	.	.	.									.	.	.	.
Template Conservation
Template Sequence		R	I	T	G	L	G	G	F	R	E	V	G	R	S	A	L	L	V	Q	T	D	E	S	F	V	L	V	D	F	G	V	N	V	A	M	L	N	D	P	Y	K	A	F	P	H	F	D	A	P	E	F	Q	Y	V	L	R	E	G	L	L	D	A	I	I	I	T	H	A	H	L	D	H	C	G	M	L	P	Y	L	F
Template Known Secondary structure									S	S	S	S	S									S	S											G	G	G	T	T						S			T	T										T	T								S		S	S					T	T
Template Predicted Secondary structure
Template SS confidence
		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	E	A	D	V	K	S	G	K	V	Q	V	I	A	P	A	G	F	M	D	E	A	I	S	E	N	V	L	A	G	N	I	M	S	R	R	A	L	Y	S	Y	G	L	L	L	P	H	N	A	Q	G	N	V	G	N	G	L	G	V	T	L	A	T	G	D	P	S	I	I	A	P	T	K	T	I	V	R	T	G	E
Query Conservation
Alig confidence				.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Template Conservation				.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Template Sequence		R	Y	.	.	.	N	L	F	D	G	P	I	Y	T	T	P	P	T	R	D	L	M	V	L	L	Q	K	D	F	I	E	I	Q	Q	S	N	G	Q	D	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	Y	R	P	R	D	I	K	E	V	I	K	H	T	I	T	L	.	D	Y	G	E
Template Known Secondary structure			T	.	.	.	T				S																										T	T				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S											T					.		T	T
Template Predicted Secondary structure				.	.	.																																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Template SS confidence
		270	.				.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.																			.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.		.	.	.	.
		274	.	.	.	.		.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300					.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure							.																							.	.	.	.
Query SS confidence							.																							.	.	.	.
Query Sequence		K	M	I	I	D	.	G	L	E	F	D	F	L	M	T	P	G	S	E	A	P	A	E	M	H	F	Y	I	.	.	.	.	P	A	L	K	A	L	C	T	A	E
Query Conservation							.																							.	.	.	.
Alig confidence							.											.	.											.	.	.	.
Template Conservation																		.	.
Template Sequence		V	R	D	I	S	P	D	I	R	L	T	L	H	N	A	G	.	.	H	I	L	G	S	A	I	V	H	L	H	I	G	N	G	L	H	N	I	A	I	T	G	D
Template Known Secondary structure							T	T									S	.	.	S	S	T	T									T	T	T	T	T							S
Template Predicted Secondary structure																		.	.
Template SS confidence
		328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.			.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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