Job Description P32717 Confidence 98.67% Date Thu Jan 5 11:50:40 GMT 2012 Rank 74 Aligned Residues 162 % Identity 17% Template c2xr1B_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:cleavage and polyadenylation specificity factor 100 kd PDBTitle: dimeric archaeal cleavage and polyadenylation specificity2 factor with n-terminal kh domains (kh-cpsf) from methanosarcina3 mazei Resolution 2.59 Å

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		124	.	.	.	.	.	130	.	.	.			.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.			.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.																																.	.
Query SS confidence												.	.																																.	.
Query Sequence		K	M	Y	Q	V	R	G	Q	D	I	.	.	S	N	I	T	F	V	E	G	E	K	G	I	I	V	I	D	P	L	V	T	P	P	A	A	K	A	A	L	D	L	Y	.	.	F	Q	H	R	P	Q	K	P	I	V	A	V	I	Y	T	H	S	H	T	D	H	Y	G	G	V	K	G	I	I	S	E	A	D	V	K
Query Conservation												.	.																																.	.
Alig confidence												.	.																																.	.																															.	.	.	.
Template Conservation																																																																													.	.	.	.
Template Sequence		R	V	T	A	L	G	G	C	K	E	V	G	R	S	C	F	L	L	S	T	P	E	S	R	I	L	I	D	C	G	V	N	V	G	S	D	E	N	M	T	P	Y	L	Y	V	P	E	V	F	P	L	N	Q	I	D	A	V	I	V	T	H	A	H	L	D	H	Q	G	L	V	P	L	L	F	K	.	.	.	.	Y
Template Known Secondary structure									S	S	S	S	S									S	S												S	S		S	S					T	T	S	T	T	T		S	G	G	G								S	S						T	T							.	.	.	.	T
Template Predicted Secondary structure																																																																													.	.	.	.
Template SS confidence
		182	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.					.
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																																	.
Query SS confidence																																																																																	.
Query Sequence		S	G	K	V	Q	V	I	A	P	A	G	F	M	D	E	A	I	S	E	N	V	L	A	G	N	I	M	S	R	R	A	L	Y	S	Y	G	L	L	L	P	H	N	A	Q	G	N	V	G	N	G	L	G	V	T	L	A	T	G	D	P	S	I	I	A	P	T	K	T	I	V	R	T	G	E	K	M	I	I	D	.
Query Conservation																																																																																	.
Alig confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																												.
Template Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	Y	E	G	P	V	Y	C	T	P	P	T	R	D	L	M	V	L	L	Q	L	D	Y	I	D	V	A	A	K	E	G	K	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	P	Y	E	S	G	M	V	A	K	T	L	K	H	T	I	P	L	D	Y	E	E	V	T	D	I	A	P
Template Known Secondary structure		T			S																											T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S		T									T						T	T							T
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290																				.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300					.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure																								.	.	.	.
Query SS confidence																								.	.	.	.
Query Sequence		G	L	E	F	D	F	L	M	T	P	G	S	E	A	P	A	E	M	H	F	Y	I	.	.	.	.	P	A	L	K	A	L	C	T	A	E
Query Conservation																								.	.	.	.
Alig confidence												.	.											.	.	.	.
Template Conservation												.	.
Template Sequence		D	I	K	L	T	F	H	N	A	G	.	.	H	I	L	G	S	A	I	S	H	F	H	I	G	D	G	L	H	N	V	V	F	T	G	D
Template Known Secondary structure		T									S	.	.	S	S	T	T									T	T	T	T								S
Template Predicted Secondary structure												.	.
Template SS confidence
		319	320	.	.	.	.	.	.	.	.			.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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