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Job DescriptionP32717
Confidence99.96%DateThu Jan 5 11:50:40 GMT 2012
Rank19Aligned Residues280
% Identity20%Templatec1vmeB_
PDB info PDB header:electron transportChain: B: PDB Molecule:flavoprotein; PDBTitle: crystal structure of flavoprotein (tm0755) from thermotoga maritima at2 1.80 a resolution
Resolution1.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   118.120.... .....130.... .....140.........150.........160.........170.........
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Query Sequence  LFKVTDK. . MYQVRGQDIS. . . . . . . . . . . . . . . . NITFVEGEKGIIVIDPLVTPPAAKAALDLYFQHRPQKPIVAVIYT
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Template Sequence  TERIFDDPEIYVLRIDDDRIRYFEAVWEIPEGISYNAYLVKLNGANVLIDGW. KGNYAKEFIDALSKIVDPKEITHIIVN
Template Known Secondary structure  TTT
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TTT
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GGGTTS
GGG


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   6...10.........20.........30.........40.........50....... ..60.........70.........80....
 
   180.........190.........200.........210.........220.........230.........240.........250.........
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Query Sequence  HSHTDHYGGVKGIISEADVKSGKVQVIAPAGFMDEAISENVLAGNIMSRRALYSYGLLLPHNAQGNVGNGLGVTLATGDP
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Template Sequence  HTEPDHSGSLPATLKT. . . IGHDVEIIASNFGKRLLEG. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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   85....90.........100 .........110.........
 
   260.........270.........280.........290.........300.........310.........320.......
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Query Sequence  SIIAPTKTIVRTGEKMIIDGLEFDFLMTPGSEAPAEMHFYIPALKALCTAENATHTLHNFYTLRGAKT. . . . . . . . . . . .
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Template Sequence  FYGIKDVTVVKDGEEREIGGKKFKFVXTPWLHWPDTXVTYLD. . GILFSCDVGGGYLLPEILDDSNESVVERYLPHVTKY
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TT
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   120.........130.........140.........150.........160. ........170.........180.........190.......
 
   328.330.........340.........350.........360.........370.........380.. .......390....
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Query Sequence  . . . . . . RDTSKWTEYLNETLDMWGNDAEVLFMPHTWPVWGNKHINDYIGKYRDTIKYIHDQ. . . . . . . TLHLANQGYTMN
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Template Sequence  IVTVIGHYKNYILEGAEKLSSL. . . KIKALLPGHG. LIW. KKDPQRLLNHYVSVAKGDPKKGKVTVIYDSXYGFVENVXK
Template Known Secondary structure  GGGTTS...

SSSS.
BB.SS
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   198.200.........210......... 220......... 230.. .......240.........250.........260.........270..
 
   395....400.........410.........420.........430.........440.........450
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Query Sequence  EIGDMIKLPPALANNWASRGYYGSVSHNARAVYNFYLGYYDGNPANLHPYGQVEMG
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Template Sequence  KAIDSLKEKGFTPVVYKFSDEERPAISEILKDIPDSEALIFGVSTYEAEIHPLXRF
Template Known Secondary structure  TT

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STT
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   273......280.........290.........300.........310.........320........
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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