Job Description P32717 Confidence 99.96% Date Thu Jan 5 11:50:40 GMT 2012 Rank 19 Aligned Residues 280 % Identity 20% Template c1vmeB_ PDB info PDB header:electron transport Chain: B: PDB Molecule:flavoprotein; PDBTitle: crystal structure of flavoprotein (tm0755) from thermotoga maritima at2 1.80 a resolution Resolution 1.80 Å

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		118	.	120	.	.	.	.			.	.	.	.	.	130	.	.	.	.																	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.
Predicted Secondary structure									.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	F	K	V	T	D	K	.	.	M	Y	Q	V	R	G	Q	D	I	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	I	T	F	V	E	G	E	K	G	I	I	V	I	D	P	L	V	T	P	P	A	A	K	A	A	L	D	L	Y	F	Q	H	R	P	Q	K	P	I	V	A	V	I	Y	T
Query Conservation									.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.
Template Conservation																																																						.
Template Sequence		T	E	R	I	F	D	D	P	E	I	Y	V	L	R	I	D	D	D	R	I	R	Y	F	E	A	V	W	E	I	P	E	G	I	S	Y	N	A	Y	L	V	K	L	N	G	A	N	V	L	I	D	G	W	.	K	G	N	Y	A	K	E	F	I	D	A	L	S	K	I	V	D	P	K	E	I	T	H	I	I	V	N
Template Known Secondary structure							T	T	T											S					T	T	T				T	T												T	T									.		G	G	G										T	T	S		G	G	G							S
Template Predicted Secondary structure																																																						.
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.		.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.
		180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	S	H	T	D	H	Y	G	G	V	K	G	I	I	S	E	A	D	V	K	S	G	K	V	Q	V	I	A	P	A	G	F	M	D	E	A	I	S	E	N	V	L	A	G	N	I	M	S	R	R	A	L	Y	S	Y	G	L	L	L	P	H	N	A	Q	G	N	V	G	N	G	L	G	V	T	L	A	T	G	D	P
Query Conservation
Alig confidence																		.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																		.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		H	T	E	P	D	H	S	G	S	L	P	A	T	L	K	T	.	.	.	I	G	H	D	V	E	I	I	A	S	N	F	G	K	R	L	L	E	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure									T	T								.	.	.			S																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																		.	.	.																				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		85	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100				.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.
Predicted Secondary structure																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	I	I	A	P	T	K	T	I	V	R	T	G	E	K	M	I	I	D	G	L	E	F	D	F	L	M	T	P	G	S	E	A	P	A	E	M	H	F	Y	I	P	A	L	K	A	L	C	T	A	E	N	A	T	H	T	L	H	N	F	Y	T	L	R	G	A	K	T	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																						.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																												.	.																									.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																												.	.
Template Sequence		F	Y	G	I	K	D	V	T	V	V	K	D	G	E	E	R	E	I	G	G	K	K	F	K	F	V	X	T	P	W	L	H	W	P	D	T	X	V	T	Y	L	D	.	.	G	I	L	F	S	C	D	V	G	G	G	Y	L	L	P	E	I	L	D	D	S	N	E	S	V	V	E	R	Y	L	P	H	V	T	K	Y
Template Known Secondary structure													T	T						T	T									T	T	S	S	S	T	T							T	.	.	T						T	T	T			S	S			S	S	S	B	S
Template Predicted Secondary structure																																												.	.
Template SS confidence
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.			.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
								328	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.								.	.	.	.	.	.	.	390	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.																																																								.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.																																																								.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	R	D	T	S	K	W	T	E	Y	L	N	E	T	L	D	M	W	G	N	D	A	E	V	L	F	M	P	H	T	W	P	V	W	G	N	K	H	I	N	D	Y	I	G	K	Y	R	D	T	I	K	Y	I	H	D	Q	.	.	.	.	.	.	.	T	L	H	L	A	N	Q	G	Y	T	M	N
Query Conservation		.	.	.	.	.	.																																																								.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.																	.	.	.											.				.																						.	.	.	.	.	.	.
Template Conservation																								.	.	.											.				.
Template Sequence		I	V	T	V	I	G	H	Y	K	N	Y	I	L	E	G	A	E	K	L	S	S	L	.	.	.	K	I	K	A	L	L	P	G	H	G	.	L	I	W	.	K	K	D	P	Q	R	L	L	N	H	Y	V	S	V	A	K	G	D	P	K	K	G	K	V	T	V	I	Y	D	S	X	Y	G	F	V	E	N	V	X	K
Template Known Secondary structure							G	G	G												T	T	S	.	.	.			S					S	S	S	.		B	B	.	S	S															T				T	T									S	S	S
Template Predicted Secondary structure																								.	.	.											.				.
Template SS confidence
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.				220	.	.	.	.	.	.	.	.	.		230	.	.		.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.
		395	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450
Predicted Secondary structure
Query SS confidence
Query Sequence		E	I	G	D	M	I	K	L	P	P	A	L	A	N	N	W	A	S	R	G	Y	Y	G	S	V	S	H	N	A	R	A	V	Y	N	F	Y	L	G	Y	Y	D	G	N	P	A	N	L	H	P	Y	G	Q	V	E	M	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	A	I	D	S	L	K	E	K	G	F	T	P	V	V	Y	K	F	S	D	E	E	R	P	A	I	S	E	I	L	K	D	I	P	D	S	E	A	L	I	F	G	V	S	T	Y	E	A	E	I	H	P	L	X	R	F
Template Known Secondary structure										T	T										S	S												S	T	T		S										T	T
Template Predicted Secondary structure
Template SS confidence
		273	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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