Job Description P32717 Confidence 99.97% Date Thu Jan 5 11:50:40 GMT 2012 Rank 12 Aligned Residues 313 % Identity 14% Template c1e5dA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:rubredoxin\:oxygen oxidoreductase; PDBTitle: rubredoxin oxygen:oxidoreductase (roo) from anaerobe2 desulfovibrio gigas Resolution 2.5 Å

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		120	.	.	.	.	.	.	.	.	.	130	.	.																	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		K	V	T	D	K	M	Y	Q	V	R	G	Q	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	S	N	I	T	F	V	E	G	E	K	G	I	I	V	I	D	P	L	V	T	P	P	A	A	K	A	A	L	D	L	Y	F	Q	H	R	P	Q	K	P	I	V	A	V	I	Y	T	H	S	H	T
Query Conservation															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.												.
Template Conservation																																								.												.
Template Sequence		K	I	I	D	G	F	H	L	V	G	A	I	D	W	N	S	R	D	F	H	G	Y	T	L	S	P	M	G	T	T	Y	N	A	Y	L	V	E	D	.	E	K	T	T	L	F	D	T	V	K	A	.	E	Y	K	G	E	L	L	C	G	I	A	S	V	I	D	P	K	K	I	D	Y	L	V	I	Q	H	L	E	L
Template Known Secondary structure					T	T									T	T					T	T	T				T	T											S	.	S	S									G	.	G	G										T	T	S		G	G	G										S
Template Predicted Secondary structure																																								.												.
Template SS confidence
		5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.		.	.	.	.	.	.	.	50	.	.	.		.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	H	Y	G	G	V	K	G	I	I	S	E	A	D	V	K	S	G	K	V	Q	V	I	A	P	A	G	F	M	D	E	A	I	S	E	N	V	L	A	G	N	I	M	S	R	R	A	L	Y	S	Y	G	L	L	L	P	H	N	A	Q	G	N	V	G	N	G	L	G	V	T	L	A	T	G	D	P	S	I	I	A
Query Conservation
Alig confidence													.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		D	H	A	G	A	L	P	A	L	I	E	.	.	.	.	A	C	Q	P	E	K	I	F	T	S	S	L	G	Q	K	A	M	E	S	H	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	Y	K	D
Template Known Secondary structure					T	T							.	.	.	.					S																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S	S
Template Predicted Secondary structure													.	.	.	.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.					.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.																																									.	.	.	.
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure																																																																								.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																								.	.	.	.	.	.	.	.	.	.
Query Sequence		P	T	K	T	I	V	R	T	G	E	K	M	I	I	D	G	L	E	F	D	F	L	M	T	P	G	S	E	A	P	A	E	M	H	F	Y	I	P	A	L	K	A	L	C	T	A	E	N	A	T	H	T	L	H	N	F	Y	T	L	R	G	A	K	T	R	D	T	S	K	W	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																								.	.	.	.	.	.	.	.	.	.
Alig confidence																																																																								.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		W	P	V	Q	V	V	K	H	G	E	T	L	S	L	G	K	R	T	V	T	F	Y	E	T	R	M	L	H	W	P	D	S	M	V	S	W	F	A	D	E	K	V	L	I	S	N	D	I	F	G	Q	N	I	A	A	S	E	R	F	S	D	Q	I	P	V	H	T	L	E	R	A	M	R	E	Y	Y	A	N	I	V
Template Known Secondary structure									T	T						S	S									T	T	S	S	S	T	T							T	T	T	T						T	T	T							S			B	G	G	G	S																	T
Template Predicted Secondary structure
Template SS confidence
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.
									334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	T	E	Y	L	N	E	T	L	D	M	W	G	N	D	A	E	V	L	F	M	P	H	T	W	P	V	W	G	N	K	H	I	N	D	Y	I	G	K	Y	R	D	T	I	K	Y	I	H	D	Q	T	L	H	L	A	N	Q	G	Y	T	M	N	E	I	G	D	M	I	K	L	P	P	A	L
Query Conservation		.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.											.
Template Conservation																			.
Template Sequence		N	P	Y	A	P	Q	T	L	K	A	I	E	T	L	V	G	A	.	G	V	A	P	E	F	I	C	P	D	H	G	V	I	F	R	G	A	D	Q	C	T	F	A	V	Q	K	Y	V	E	Y	A	E	Q	K	P	T	N	K	V	V	I	F	Y	D	S	M	W	H	S	T	E	K	M	A	R	V	L	A	E	S	F
Template Known Secondary structure		G	G	G														T	.	T				S					S	S	S		B			S																					S									S	S	S
Template Predicted Secondary structure																			.
Template SS confidence
		199	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.		.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.
		407	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.				.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.																	.	.	460	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																			.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	N	N	W	A	S	R	G	Y	Y	G	S	V	S	H	N	A	.	.	.	R	A	V	Y	N	F	Y	L	G	Y	Y	D	G	N	P	A	N	L	H	P	Y	G	Q	V	E	M	G	K	R	Y	V	Q	A	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	S	A	R	V	I	N	L	A
Query Conservation																			.	.	.																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																			.	.	.																									.	.									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																														.	.
Template Sequence		R	D	E	G	C	T	V	K	L	M	W	C	K	A	C	H	H	S	Q	I	M	S	E	I	S	D	A	G	A	V	I	V	G	S	P	T	H	N	N	G	I	L	P	Y	.	.	V	A	G	T	L	Q	Y	I	K	G	L	R	P	Q	N	K	I	G	G	A	F	G	S	F	G	W	S	G	E	S	T	K	V	L
Template Known Secondary structure				T	T								T	T	T	S											T		S									B	T	T	B					.	.											T				S										S	S	S
Template Predicted Secondary structure																																														.	.
Template SS confidence
		278	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.			.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.
		468	.	470	.	.	.	.	.	.	.	.	.	480	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	E	A	N	K	Q	G	D	Y	R	W	S	A	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	E	W	L	T	G	M	G	F	D	M	P	A	T
Template Known Secondary structure								T	T		B			S
Template Predicted Secondary structure
Template SS confidence
		356	.	.	.	360	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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