Job Description P07649 Confidence 100.00% Date Thu Jan 5 11:00:26 GMT 2012 Rank 2 Aligned Residues 244 % Identity 34% Template c1vs3B_ PDB info PDB header:isomerase Chain: B: PDB Molecule:trna pseudouridine synthase a; PDBTitle: crystal structure of the trna pseudouridine synthase trua from thermus2 thermophilus hb8 Resolution 2.25 Å

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		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.		.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure																									.
Query SS confidence																									.
Query Sequence		V	Y	K	I	A	L	G	I	E	Y	D	G	S	K	Y	Y	G	W	Q	R	Q	N	E	.	V	R	S	V	Q	E	K	L	E	K	A	L	S	Q	V	A	N	E	P	I	T	V	F	C	A	G	R	T	D	A	G	V	H	G	T	G	Q	V	V	H	F	E	T	T	A	L	R	K	D	A	A	W	T	L	G	V
Query Conservation																									.
Alig confidence																									.																.
Template Conservation																																									.
Template Sequence		M	R	R	L	L	L	L	C	E	Y	D	G	T	L	F	A	G	L	Q	R	Q	G	R	G	L	R	T	V	Q	G	E	L	E	R	A	L	P	G	I	.	G	A	L	P	K	A	V	A	A	G	R	T	D	A	G	V	H	A	L	A	M	P	F	H	V	D	V	E	S	A	I	P	V	E	K	V	P	E	A	L
Template Known Secondary structure														T	T	S	S		S	S			S	T	T												G	G	G	G	.	T	B		S					S	S				T	T														S				G	G	G
Template Predicted Secondary structure																																									.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	A	N	L	P	G	D	I	A	V	R	W	V	K	T	V	P	D	D	F	H	A	R	F	S	A	T	A	R	R	Y	R	Y	I	I	Y	N	H	R	L	R	P	A	V	L	S	K	G	V	T	H	F	Y	E	P	L	D	A	E	R	M	H	R	A	A	Q	C	L	L	G	E	N	D	F	T	S	F	R	A	V
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	R	L	L	P	E	D	L	K	V	V	G	A	R	E	V	A	P	D	F	H	A	R	K	D	A	L	W	R	A	Y	R	Y	R	I	L	V	R	P	H	P	S	P	L	L	R	H	R	A	L	W	V	R	R	P	L	D	L	E	A	M	E	E	A	L	S	L	L	L	G	R	H	N	F	L	G	F	A	K	E
Template Known Secondary structure					S		T	T											T	T			T	T	T	T		S											S	S	S			T	T	T	T	T	T	S					S																					G	G	G		S	S
Template Predicted Secondary structure
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.					.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure																			.	.	.	.
Query SS confidence																			.	.	.	.
Query Sequence		Q	C	Q	S	R	T	P	W	R	N	V	M	H	I	N	V	T	.	.	.	.	R	H	G	P	Y	V	V	V	D	I	K	A	N	A	F	V	H	H	M	V	R	N	I	V	G	S	L	M	E	V	G	A	H	N	Q	P	E	S	W	I	A	E	L	L	A	A	K	D	R	T	L	A	A	A	T	A	K	A	E
Query Conservation																			.	.	.	.
Alig confidence				.	.														.	.	.	.
Template Conservation				.	.
Template Sequence		E	T	.	.	R	P	G	E	R	E	L	L	E	A	R	L	Q	V	A	E	G	E	A	G	L	E	V	R	L	Y	F	R	G	K	S	F	L	R	G	Q	V	R	G	M	V	G	T	L	L	E	V	G	L	G	K	R	P	P	E	S	L	K	A	I	L	K	T	A	D	R	R	L	A	G	P	T	A	P	A	H
Template Known Secondary structure				.	.	S																	S	S											S				T	T														S	S	S	S		T	T											G	G	G	S						G	G
Template Predicted Secondary structure				.	.
Template SS confidence
		160	.			.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
		244	.	.	.	.	.	250	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	Y	L	V	A	V	D	Y	P	D	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	L	Y	F	V	E	A	A	Y	P	E	E
Template Known Secondary structure		G
Template Predicted Secondary structure
Template SS confidence
		238	.	240	.	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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