Job Description P37749 Confidence 99.97% Date Thu Jan 5 11:57:25 GMT 2012 Rank 3 Aligned Residues 280 % Identity 13% Template c3s29C_ PDB info PDB header:transferase Chain: C: PDB Molecule:sucrose synthase 1; PDBTitle: the crystal structure of sucrose synthase-1 from arabidopsis thaliana2 and its functional implications. Resolution 2.85 Å

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		43	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.																			.	.
Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		V	V	Q	R	I	I	S	S	V	K	L	S	T	F	L	C	G	L	E	N	K	D	V	L	I	F	N	F	P	M	A	K	P	F	W	H	I	L	S	F	F	H	R	L	L	K	F	R	I	V	P	L	I	H	D	I	D	E	L	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G
Query Conservation																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																	.	.	.																											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.	.	.
Template Sequence		Y	L	E	T	Y	T	E	D	A	A	V	E	L	S	K	E	L	N	G	K	P	D	L	I	I	G	N	Y	S	D	G	.	.	.	N	L	V	A	S	L	L	A	H	K	L	G	V	T	Q	C	T	I	A	H	A	L	E	K	T	K	Y	P	D	S	D	I	Y	W	K	K	L	D	D	K	Y	H	F	S	C	Q
Template Known Secondary structure		G																	S	S			S										.	.	.												T								S							S	T	T	T	T	T	T
Template Predicted Secondary structure																																	.	.	.
Template SS confidence
		388	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.				.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.																								.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.
Query SS confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.
Query Sequence		G	G	S	D	S	V	R	L	A	T	C	D	M	V	I	S	H	N	P	Q	M	T	K	Y	L	S	K	Y	M	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	D	K	I	K	D	I	K	I	F	D	Y	L	V	S	S	D	V	E	H	R	D	V	T	D	.	.
Query Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.
Alig confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.
Template Conservation
Template Sequence		F	T	A	D	I	F	A	M	N	H	T	D	F	I	I	T	S	T	F	Q	E	I	A	G	S	K	E	T	V	G	Q	Y	E	S	H	T	A	F	T	L	P	G	L	Y	R	V	V	H	G	I	D	V	F	D	P	K	F	N	I	V	S	P	G	A	D	M	S	I	Y	F	P	Y	T	E	E	K	R	R	L	T
Template Known Secondary structure												S	S					S		S							S	S	S			T	T	G	G	G	S	S				T	T	T									T	T		T	T										T	T	T				T	T		T	T	T	S		G
Template Predicted Secondary structure
Template SS confidence
		465	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.
																												160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.											.	.	.	.	.	.	190	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	Q	R	G	V	I	Y	A	G	N	L	S	R	H	K	C	S	F	I	Y	T	E	G	C	.	.	.	.	.	.	.	.	.	.	D	F	T	L	F	G	V	N	Y	E	N	.	.	.	.	.	.	.	.	.
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																									.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		K	F	H	S	E	I	E	E	L	L	Y	S	D	V	E	N	K	E	H	L	C	V	L	K	D	K	K	K	P	I	L	F	T	M	A	R	L	D	R	V	K	N	L	S	G	L	V	E	W	Y	G	K	N	T	R	L	R	E	L	A	N	L	V	V	V	G	G	D	R	R	K	E	S	K	D	N	E	E	K	A
Template Known Secondary structure		G	G											S			S	S	S			S		B	S		T	T	S										S	T	T	T	T																											T	T	S
Template Predicted Secondary structure
Template SS confidence
		545	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.
				195	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.			.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270
Predicted Secondary structure		.	.																												.	.
Query SS confidence		.	.																												.	.
Query Sequence		.	.	K	D	N	P	K	Y	L	G	S	F	D	A	Q	S	P	E	K	I	N	L	P	G	M	Q	F	G	L	.	.	I	W	D	G	D	S	V	E	T	C	S	G	A	F	G	D	Y	L	K	F	N	N	P	H	K	T	S	L	Y	L	S	M	E	L	P	V	F	I	W	D	K	A	A	L	A	D	F	I	V
Query Conservation		.	.																												.	.
Alig confidence		.	.																												.	.
Template Conservation
Template Sequence		E	M	K	K	M	Y	D	L	I	E	E	Y	K	L	N	G	Q	F	R	W	I	S	S	Q	M	D	R	V	R	N	G	E	L	Y	R	Y	I	C	D	T	K	G	A	F	V	Q	P	A	L	Y	E	A	F	G	L	T	V	V	E	A	M	T	C	G	L	P	T	F	A	T	C	K	G	G	P	A	E	I	I	V
Template Known Secondary structure													T	T		T	B	T																							T	T								S		B	S	S											T							S	S	B	T
Template Predicted Secondary structure
Template SS confidence
		625	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.
		271	.	.	.	.	.	.	.	.			280	.	.	.	.	.	.	.	.	.	290	.	.							.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
Predicted Secondary structure											.	.														.	.	.	.	.	.
Query SS confidence											.	.														.	.	.	.	.	.
Query Sequence		D	N	R	I	G	Y	A	V	G	.	.	S	I	K	E	M	Q	E	I	V	D	S	M	T	.	.	.	.	.	.	I	E	T	Y	K	Q	I	S	E	N	T	K	I	I	S	Q	K	I	R	T	G	S	Y	F	R	D	V	L	E	E	V	I	D	D	L	K
Query Conservation											.	.														.	.	.	.	.	.
Alig confidence											.	.														.	.	.	.	.	.																		.	.	.
Template Conservation																																																	.	.	.
Template Sequence		H	G	K	S	G	F	H	I	D	P	Y	H	G	D	Q	A	A	D	T	L	A	D	F	F	T	K	C	K	E	D	P	S	H	W	D	E	I	S	K	G	G	L	Q	R	I	E	E	.	.	.	K	Y	T	W	Q	I	Y	S	Q	R	L	L	T	L	T	G
Template Known Secondary structure		B	T	T	T	B					T	T	S																			T																	.	.	.
Template Predicted Secondary structure																																																	.	.	.
Template SS confidence
		705	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.				.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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