Job Description P37749 Confidence 99.88% Date Thu Jan 5 11:57:25 GMT 2012 Rank 20 Aligned Residues 257 % Identity 13% Template c2xcuC_ PDB info PDB header:transferase Chain: C: PDB Molecule:3-deoxy-d-manno-2-octulosonic acid transferase; PDBTitle: membrane-embedded monofunctional glycosyltransferase waaa of aquifex2 aeolicus, comlex with cmp Resolution 2.42 Å

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		56	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.																.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	L	C	G	L	E	N	K	D	V	L	I	F	N	F	P	M	A	K	P	F	W	H	I	L	S	F	F	H	R	L	L	K	F	R	I	V	P	L	I	H	D	I	D	E	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	G	G	G	G	S	D	S	V	R	L	A	T	C	D	M	V	I	S
Query Conservation																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																						.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.
Template Sequence		Y	L	K	T	K	S	D	F	Y	D	C	L	H	P	L	P	L	D	N	P	.	F	S	V	K	R	F	E	E	L	S	K	P	K	A	L	I	V	V	E	R	E	F	W	P	S	L	I	I	F	T	K	V	P	K	I	L	V	N	A	Y	A	K	G	S	L	I	E	K	I	L	S	K	K	F	D	L	I	I	M
Template Known Secondary structure					T	T	G	G	G		S								S	S		.													S						S													S																			G	G	G		S
Template Predicted Secondary structure																						.
Template SS confidence
		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
		121	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180											.	.	.	.	.	.	.	.	.	190
Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																														.	.	.	.	.	.	.	.	.	.
Query Sequence		H	N	P	Q	M	T	K	Y	L	S	K	Y	M	S	Q	D	K	I	K	D	I	K	I	F	D	Y	L	V	S	S	D	V	E	H	R	D	V	T	D	K	Q	R	G	V	I	Y	A	G	N	L	S	R	H	K	C	S	F	I	Y	T	.	.	.	.	.	.	.	.	.	.	E	G	C	D	F	T	L	F	G	V
Query Conservation																																																														.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.																																	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.	.
Template Sequence		R	T	Q	E	D	V	E	K	F	K	T	F	G	A	K	R	V	F	S	C	G	N	.	.	.	.	.	.	L	K	F	I	C	Q	K	G	K	G	I	K	L	K	G	E	F	I	V	A	G	S	I	H	T	G	E	V	E	I	I	L	K	A	F	K	E	I	K	K	T	Y	S	S	L	K	L	I	L	V	P	R
Template Known Secondary structure		S	S									T	T	T		S	S							.	.	.	.	.	.	G	G	G											S	S										G	G	G													T	T		T	T								S
Template Predicted Secondary structure																								.	.	.	.	.	.
Template SS confidence
		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160							.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.
		191	.	.	.		.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.				220	.	.	.	.	.	.	.	.	.	230	.	.	.		.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.		.	.	.
Predicted Secondary structure						.																										.	.	.															.																													.
Query SS confidence						.																										.	.	.															.																													.
Query Sequence		N	Y	E	N	.	K	D	N	P	K	Y	L	G	S	F	D	A	Q	S	P	E	K	I	N	L	P	G	M	Q	F	.	.	.	G	L	I	W	D	G	D	S	V	E	T	C	S	G	.	A	F	G	D	Y	L	K	F	N	N	P	H	K	T	S	L	Y	L	S	M	E	L	P	V	F	I	W	D	.	K	A	A
Query Conservation						.																										.	.	.															.																													.
Alig confidence						.																										.	.	.															.																													.
Template Conservation
Template Sequence		H	I	E	N	A	K	I	F	E	K	K	A	R	D	F	G	F	K	T	S	F	F	E	N	L	E	G	D	V	I	L	V	D	R	F	G	I	L	K	E	L	Y	P	V	G	K	I	A	I	V	G	G	T	F	V	N	I	G	G	H	N	L	L	E	P	T	C	W	G	I	P	V	I	Y	G	P	Y	T	H	K
Template Known Secondary structure		S	G	G	G											T	T						T	T				S	S							T	T						G	G	G								S	S	S	S	T	T											T	T							S			T	T
Template Predicted Secondary structure
Template SS confidence
		213	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.
		265	.	.	.	.	270	.		.	.	.	.	.	.	.			.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.		.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure									.								.	.																		.
Query SS confidence									.								.	.																		.
Query Sequence		L	A	D	F	I	V	D	.	N	R	I	G	Y	A	V	.	.	G	S	I	K	E	M	Q	E	I	V	D	S	M	T	I	E	T	.	Y	K	Q	I	S	E	N	T	K	I	I	S	Q	K	I	R	T	G	S	Y	F	R	D	V	L	E	E	V	I	D
Query Conservation									.								.	.																		.
Alig confidence									.								.	.																		.															.	.	.	.	.	.
Template Conservation																																																			.	.	.	.	.	.
Template Sequence		V	N	D	L	K	E	F	L	E	K	E	G	A	G	F	E	V	K	N	E	T	E	L	V	T	K	L	T	E	L	L	S	V	K	K	E	I	K	V	E	E	K	S	R	E	I	K	G	C	.	.	.	.	.	.	Y	L	E	K	L	R	E	F	L	R
Template Known Secondary structure		S										T	T							S														S																	.	.	.	.	.	.
Template Predicted Secondary structure																																																			.	.	.	.	.	.
Template SS confidence
		293	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.							.	.	.	.	.	.	.	.	350	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions