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Job DescriptionP37749
Confidence18.50%DateThu Jan 5 11:57:25 GMT 2012
Rank82Aligned Residues270
% Identity10%Templatec1y6gB_
PDB info PDB header:transferase/dnaChain: B: PDB Molecule:dna alpha-glucosyltransferase; PDBTitle: alpha-glucosyltransferase in complex with udp and a 13_mer2 dna containing a hmu base at 2.8 a resolution
Resolution2.80 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


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Query Sequence  TFLCGLENKDVLIFNFPMAKP. . . . . . . . FWHILSFFHRLLKFRIVPLIHDIDELRGGGGSDSVRLATCDMVISHNPQ. .
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Template Sequence  KALKLVNDCDILIINSVPATSVQEATINNYKKLLDNIKPSIRVVVYQHDHSVLSLRRNLGLEET. VRRADVIFSHSDNGD
Template Known Secondary structure  TSSS

BTTS
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   1067..1070.........1080.........1090.........1100.........1110.........1120.........1130 .........1140.....
 
   125....130.........140.........150.........160..... ....170..... ....180.........190...
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Query Sequence  . MTKYLSKYMSQDKIKDIKIFDYLVSSDVEHRDVTDKQRGVI. . . YAGNLSRHKC. . . . . . . SFIYTEGCDFTLFGVNYE
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Template Sequence  FNKVLMKEWYPEAPTVYNFQPPMDIVKVRSTYWKDVSEINMNINRWIGRTTTWKGFYQMFDFHEKFLKPAGKSTVMEGLE
Template Known Secondary structure  TTTTS








B



GGG


SSGGG
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   1146...1150.........1160.........1170.........1180.........1190.........1200.........1210.........1220.....
 
   194.....200....... ..210.........220.........230.........240 .........250...
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Query Sequence  NKDNPKYLGSFDAQ. . . . . SPEKINLPGMQFGLIWDGDSVETCSGAFGDYLK. . . . . . . . . . . . . . . FNNPHKTSLYLSM
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Template Sequence  RSPAFIAIKEKGIPYEYYGNREIDKMNLAPNQPAQILDCYINSEMLERMSKSGFGYQLSKLNQKYLQRSLEYTHLELGAC
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TTTT




TTSGGG


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   1236...1240.........1250.........1260.........1270.........1280.........1290.........1300.........1310.....
 
   254.....260.........270........ .280.........290..... ....300.........310.........320.
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Query Sequence  ELPVFIWDKAALADFIVDNRIGYAV. . . . . . . . . . GSIKEMQEIVDSMTIET. . YKQISENTKIISQKIRTGSYFRDVLE
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Template Sequence  GTIPVFWKSTGENLKFRVDNTPLTSHDSGIIWFDENDMESTFERIKELSSDRALYDREREKAYEFLYQHQDSSFCFKEQF
Template Known Secondary structure  TSB
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   1316...1320.........1330.........1340.........1350.........1360.........1370.........1380.........1390.....
 
   322...
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Query Sequence  EVID
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Template Sequence  DIIT
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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