Job Description P37749 Confidence 99.94% Date Thu Jan 5 11:57:25 GMT 2012 Rank 12 Aligned Residues 271 % Identity 15% Template c1uquB_ PDB info PDB header:synthase Chain: B: PDB Molecule:alpha, alpha-trehalose-phosphate synthase; PDBTitle: trehalose-6-phosphate from e. coli bound with udp-glucose. Resolution 2.0 Å

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		46	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100							.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																									.	.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.	.
Query Sequence		R	I	I	S	S	V	K	L	S	T	F	L	C	G	L	E	N	K	D	V	L	I	F	N	F	P	M	A	K	P	F	W	H	I	L	S	F	F	H	R	L	L	K	F	R	I	V	P	L	I	H	D	I	D	E	.	.	.	.	.	.	L	R	G	G	G	G	S	D	S	V	R	L	A	T	C	D	M	V	I
Query Conservation																																																									.	.	.	.	.	.
Alig confidence																																						.	.																		.	.	.	.	.	.
Template Conservation																																						.	.
Template Sequence		L	R	V	N	A	L	L	A	D	K	L	L	P	L	L	Q	D	D	D	I	I	W	I	H	D	Y	H	L	L	P	F	A	H	E	L	R	.	.	K	R	G	V	N	N	R	I	G	F	F	L	H	I	P	F	P	T	P	E	I	F	N	A	L	P	T	Y	D	T	L	L	E	Q	L	C	D	Y	D	L	L	G
Template Known Secondary structure													G	G	G			T	T							S	G	G	G	T	T							.	.	T	T	T			S								S									T	T	S	T	T									T	T	S	S
Template Predicted Secondary structure																																						.	.
Template SS confidence
		106	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.			.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
		120	.	.	.	.	.	.	.	.	.	130	.																			.	.	.	.	.	.	.	.	140	.	.	.												.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	H	N	P	Q	M	T	K	Y	L	S	K	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	M	S	Q	D	K	I	K	D	I	K	I	.	.	.	.	.	.	.	.	.	.	.	F	D	Y	L	V	S	S	D	V	E	H	R	D	V	T	D	K	Q	R	G	V	I	Y	A	G	N	L
Query Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	Q	T	E	N	D	R	L	A	F	L	D	C	L	S	N	L	T	R	V	T	T	R	S	A	K	S	H	T	A	W	G	K	A	F	R	T	E	V	Y	P	I	G	I	E	P	K	E	I	A	K	Q	A	A	G	P	L	P	P	K	L	A	Q	L	K	A	E	L	K	N	V	Q	N	I	F	S	V	E	R	L
Template Known Secondary structure			S	S															S							T	T					T	T																							S				G	G	G	T	T	S	T	T	T	S	T	T
Template Predicted Secondary structure
Template SS confidence
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.
		171	.	.	.	.	.	.	.	.	180	.	.	.	.															.	.	.	.	.	190	.	.	.	.																	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		S	R	H	K	C	S	F	I	Y	T	E	G	C	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	T	L	F	G	V	N	Y	E	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	D	N	P	K	Y	L	G	S	F	D	A	Q	S	P	E	K	I	N	L	P	G	M	Q	F	G
Query Conservation																.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.	.	.	.											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		D	Y	S	K	G	L	P	E	R	F	L	A	Y	E	A	L	L	E	K	Y	P	Q	H	H	G	K	I	R	Y	T	Q	I	A	P	T	S	R	G	D	V	Q	A	Y	Q	D	I	R	H	Q	L	E	N	E	A	G	R	I	N	G	K	Y	G	Q	L	G	W	T	P	L	Y	Y	L	N	Q	H	F	D	R	K	L
Template Known Secondary structure			G	G	G																	G	G	G	T	T	T												T	T	S	S		T	T																			B	T	T	B		S						S
Template Predicted Secondary structure
Template SS confidence
		264	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.						.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.			280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure																																						.	.	.	.	.																								.	.												.	.	.
Query SS confidence																																						.	.	.	.	.																								.	.												.	.	.
Query Sequence		L	I	W	D	G	D	S	V	E	T	C	S	G	A	F	G	D	Y	L	K	F	N	N	P	H	K	T	S	L	Y	L	S	M	E	L	P	.	.	.	.	.	V	F	I	W	D	K	A	A	L	A	D	F	I	V	D	N	R	I	G	Y	A	V	G	.	.	S	I	K	E	M	Q	E	I	V	D	S	.	.	.
Query Conservation																																						.	.	.	.	.																								.	.												.	.	.
Alig confidence				.	.	.																																.	.	.	.	.																.	.	.						.	.												.	.	.
Template Conservation				.	.	.																																																				.	.	.
Template Sequence		L	M	.	.	.	K	I	F	R	Y	S	D	V	G	L	V	T	P	L	R	D	G	M	N	L	V	A	K	E	Y	V	A	A	Q	D	P	A	N	P	G	V	L	V	L	S	Q	F	A	G	A	A	N	E	L	T	S	.	.	.	A	L	I	V	N	P	Y	D	R	D	E	V	A	A	A	L	D	R	A	L	T
Template Known Secondary structure				.	.	.							S							S	S	B	S												S		T	T	S								T	T	B	G	G	G	G	T		T	T	.	.	.	S					T	T														T
Template Predicted Secondary structure				.	.	.																																																				.	.	.
Template SS confidence
		344	.				.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.				.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	T	I	E	T	Y	K	Q	I	S	E	N	T	K	I	I	S	Q	K	I	R	T	G	S	Y	F	R	D	V	L	E	E	V	I	D	D	L	K
Query Conservation
Alig confidence																					.	.	.	.
Template Conservation																					.	.	.	.
Template Sequence		M	S	L	A	E	R	I	S	R	H	A	E	M	L	D	V	I	V	K	.	.	.	.	N	D	I	N	H	W	Q	E	C	F	I	S	D	L	K
Template Known Secondary structure																					.	.	.	.	T
Template Predicted Secondary structure																					.	.	.	.
Template SS confidence
		418	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.					.	.	.	440	.	.	.	.	.	.	.	.	.	450	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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