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Job DescriptionP77802
Confidence100.00%DateThu Jan 5 12:32:57 GMT 2012
Rank2Aligned Residues453
% Identity12%Templatec3ohnA_
PDB info PDB header:membrane proteinChain: A: PDB Molecule:outer membrane usher protein fimd; PDBTitle: crystal structure of the fimd translocation domain
Resolution3.01 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   170.........180.........190.........200.........210.........220.........230.........240.........
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Query Sequence  SSNLSYNLGVYNNQLRNGGSNTSSYLSLNNVTALREHHVVLDGSLYGIGSGQQDSELYKAMYERDFAGHRFAGGMLDTWN
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Template Sequence  AGLLNYNFSGNSVQNRIGGNSHYAYLNLQSGLNIGAWRLRDNTTWSYNSSN. . KWQHINTWLERDIIPLRSRLTLGDGYT
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   139140.........150.........160.........170.........180......... 190.........200.........210......
 
   250.........260.........270.........280.........290.........300.........310.........320.........
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Query Sequence  LQSLGPMTAISAGKIYGLSWGNQASSTIFDSSQSATPVIAFLPAAGEVHLTRDGRLLSVQNFTMGNHEVDTRGLPYGIYD
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Template Sequence  . . . . . QGDIFDGINFRGAQLASDDN. . . . . . . . . . PVIHGIARGTAQVTIKQNGYDIYNSTVPPGPFTINDIYAAGNSGD
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   224.....230.........240... ......250.........260.........270.........280........
 
   330.........340.........350.........360.........370.........380...... ...390.........400.
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Query Sequence  VEVEVIVNGRVISKRTQRVNKLFSRGRGVGAPLAWQVWGGSFHMDRWSENGKKTRPA. . . . . . . . KESWLAGASTSGSLS
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Template Sequence  LQVTIKEAD. . GSTQIFTVPYSSVPLLQREGHTRYSITAGEYRSGNAQQEKPRFFQSTLLHGLPAGWTIYGGTQLADRYR
Template Known Secondary structure  SS..S










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   299300....... ..310.........320.........330.........340.........350.........360.........370......
 
   402...... .410.........420.........430.........440.........450.........460.........470. ...
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Query Sequence  TLSWAAT. . GYGYDNQAVGETRLTLPLGGAINVNLQNMLASDSSWSSIGSISATLPGGFSSLWVNQEKTRIG. . . . . NQL
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Template Sequence  AFNFGIGKNMGALGALSVDMTQANSTLPDDSQHDGQSVRFLYNKSL. . . GTNIQLVGYRYSTSGYFNFADTTYSRMNGTD
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   377..380.........390.........400.........410.........420.. .......430.........440.........450...
 
   475....480.........490.........500.........510.........520.........530.........540.........550....
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Query Sequence  RRSDADNRAIGGTLNLNSLWSKLGTFSISYNDDRRYNSHYYTADYYQNVYSGTFGSLGLRAGIQRYNNGDSNANTGKYIA
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Template Conservation              
   
      
    
                  
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Template Sequence  YYNLAYNKRGKLQLTVTQQLGRTSTLYLSGSHQTYWGTSNVDEQFQAG. LNTAFEDINWTLSYSLTKNAW. QKGRDQMLA
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TTS
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   473......480.........490.........500.........510.........520 .........530.........540. ........550
 
   555....560.........570.........580.........590.........600.........610.........620.........630....
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Query Sequence  LDLSLPLGNWFSAGMTHQNGYTMANLSARKQFDEGTIRTVGANLSRAISGDTGDDKTLSGGAYAQFDARYASGTLNVNSA
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Template Sequence  LNVNIPFASASYSMSHDLNGRMTNLAGVYGTLLED. . NNLSYSVQTGYAGGGDGNSGSTGYATLNYRGGYGNANIGYSHS
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   551........560.........570.........580..... ....590.........600.........610.........620........
 
   635....640.........
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Query Sequence  ADGYVNTNLTANGSV
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Template Conservation    .        

 
Template Sequence  DD. IKQLYYGVSGGV
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   643. .....650......
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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